Demo: Running tsinfer on Simulated Data

Running mini_tsinfer on simulated genomic data.

../../_images/fig_demo_tsinfer.png — tsinfer demo on msprime-simulated data. Panel A: Input genotype matrix from msprime (20 samples, 100 kb). Panel B: Generated ancestral haplotypes ordered by inferred age. Panel C: Inferred tree sequence edges showing the copying structure. Panel D: SFS comparison between the true and inferred tree sequences.

This figure was generated by running the mini_tsinfer implementation on data simulated with msprime. The script is at figures/fig_demo_tsinfer.py.