Change log

Major changes to gokit are summarized here.

0.1.2 Current release with full feature set including:

• Single-study and batch enrichment analysis

• Semantic similarity comparisons (Jaccard, Resnik, Lin, Wang)

• Auto-plot emission from enrichment runs

• Consolidated markdown report generation

• On-disk OBO cache with SHA256 invalidation

• Run manifest for reproducibility

0.1.1 Initial public release with core enrichment functionality:

• Fisher’s exact test for overrepresentation analysis

• Multiple testing correction (BH, Bonferroni, Holm)

• Support for id2gos, GAF, GPAD, and gene2go association formats

• Automatic format detection

• Gene ID normalization

• Term propagation through GO hierarchy

• TSV, JSONL, and Parquet output formats

• Plotting support (term-bar, direction-summary, semantic-network)

• Input validation command

• GO ontology download command