LICENSE
README.md
pyproject.toml
REDItools3.egg-info/PKG-INFO
REDItools3.egg-info/SOURCES.txt
REDItools3.egg-info/dependency_links.txt
REDItools3.egg-info/requires.txt
REDItools3.egg-info/top_level.txt
reditools/__init__.py
reditools/__main__.py
reditools/alignment_file.py
reditools/alignment_manager.py
reditools/compiled_position.py
reditools/compiled_reads.py
reditools/fasta_file.py
reditools/file_utils.py
reditools/logger.py
reditools/reditools.py
reditools/region.py
reditools/region_collection.py
reditools/rtannotater.py
reditools/rtindexer.py
reditools/tools/analyze/__init__.py
reditools/tools/analyze/concat_output.py
reditools/tools/analyze/main.py
reditools/tools/analyze/monitor.py
reditools/tools/analyze/parse_args.py
reditools/tools/analyze/redi_thread.py
reditools/tools/analyze/region_args.py
reditools/tools/analyze/setup_alignment_manager.py
reditools/tools/analyze/setup_rtools.py
reditools/tools/analyze/write_results.py
reditools/tools/analyze/rtchecks/__init__.py
reditools/tools/analyze/rtchecks/check_column_edit_frequency.py
reditools/tools/analyze/rtchecks/check_column_min_edits.py
reditools/tools/analyze/rtchecks/check_exclusions.py
reditools/tools/analyze/rtchecks/check_max_editing_nucleotides.py
reditools/tools/analyze/rtchecks/check_min_read_depth.py
reditools/tools/analyze/rtchecks/check_target_positions.py
reditools/tools/analyze/rtchecks/check_variants.py
reditools/tools/analyze/rtchecks/rtchecks.py
reditools/tools/annotate/__init__.py
reditools/tools/annotate/main.py
reditools/tools/annotate/parse_args.py
reditools/tools/find_repeats/__init__.py
reditools/tools/find_repeats/main.py
reditools/tools/index/__init__.py
reditools/tools/index/main.py
reditools/tools/index/parse_args.py