LICENSE
MANIFEST.in
README.md
ppgtk_cli.py
setup.py
ppgtk/__init__.py
ppgtk/math.py
ppgtk/utils.py
ppgtk.egg-info/PKG-INFO
ppgtk.egg-info/SOURCES.txt
ppgtk.egg-info/dependency_links.txt
ppgtk.egg-info/entry_points.txt
ppgtk.egg-info/requires.txt
ppgtk.egg-info/top_level.txt
ppgtk/calculate_frequencies/__init__.py
ppgtk/calculate_frequencies/calculate_frequencies.py
ppgtk/calculate_frequencies/impute.py
ppgtk/classify_ploidy/__init__.py
ppgtk/classify_ploidy/logistic_regression.py
ppgtk/conversion/__init__.py
ppgtk/conversion/structure.py
ppgtk/diversity_statistics/__init__.py
ppgtk/diversity_statistics/sfs.py
ppgtk/diversity_statistics/theta.py
ppgtk/fit_mixtures/__init__.py
ppgtk/fit_mixtures/fit_mixtures.py
ppgtk/fit_mixtures/gmm.py
ppgtk/fit_mixtures/gmm2.py
ppgtk/fit_mixtures/gmm_fixed_means.py
ppgtk/fit_mixtures/gmm_fixed_means_fixed_weights.py
ppgtk/fit_mixtures/lmm.py
ppgtk/fit_mixtures/plot_mixtures.py
ppgtk/sampling/__init__.py
ppgtk/sampling/sampling.py
ppgtk/windowing/__init__.py
ppgtk/windowing/windowing.py
test/test_cli_estimate_theta_windowing.py
test/test_cli_individual_genotypes.py
test/test_cli_pop_freqs.py