# Seeds for failure cases proptest has generated in the past. It is
# automatically read and these particular cases re-run before any
# novel cases are generated.
#
# It is recommended to check this file in to source control so that
# everyone who runs the test benefits from these saved cases.
cc 88c73c054a916fb8b973fdee0b519229e262619dba6988c4effeb09536d07367 # shrinks to seq = "A", block = 1, ranges = [(2, 2)], pattern = "A"
cc 872bf4c9699a30414e314ead1f4f0024244dd594c112f5f1081651ff32bcdb7a # shrinks to seq = "AAAAAAAAAAAAAAAAAAAAAAAAAAAAA", p = PlacedHgvs { start: 1, end: 3, edit: Ins { alt: Some("A"), uncertain: false } }
cc 9649a671bd1380eb8d22b97fb31e4049256330bcaab69418dbbd4a70816c38a0 # shrinks to seq = "GGGGGGGGG", block = 1, p = PlacedHgvs { start: 1, end: 3, edit: Ins { alt: Some("GA"), uncertain: false } }
cc 8409c2e7875d77476400dd12e85f21a9c63266299f302c7356a2ae17a3c5830c # shrinks to seq = "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC", p = PlacedHgvs { start: 1, end: 3, edit: Ins { alt: Some("A"), uncertain: false } }
cc 7d06a317784067b22876de66c29df514114b3445cefe6a43e1aa1f1a0dcb895d # shrinks to g = Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Plus, transcript_seq: "ATGCTGTTTGTATTGTGTCGTCTTTAAAGTGCTTTAAG", genome: "GACACCGTCAATGCTGTTTGTATTGTGTCGTCTTTAAAGTGCTTTAAGGACACCGTCA", exons: [ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(38), reference_start: GenomicPos(10), reference_end: GenomicPos(47), alt_strand: Plus, cigar: "38M" }], cds_start: 0, cds_end: 26, tx_exons: [(0, 38)], introns: [] }, pick = 4682, codons = 1, insert = ['T', 'T', 'G', 'T', 'C', 'T', 'A', 'A'], deletion = false
cc ca471a71bcf5ff45174888ed7e38e57893ccc358ce9b77c7fe6d60ec534e0d16 # shrinks to (seq, p) = ("ACTACTACTACTACTA", PlacedHgvs { start: 0, end: 1, edit: RefAlt { ref_: None, alt: Some("CA"), uncertain: false } })
cc b1fb265e3c7da75d54b1997ee24352b8b39861d184d448730a2f5c4cfeeb397d # shrinks to g = Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Plus, transcript_seq: "ATGTTTTTTTTTTAACCC", genome: "CCCCCCCCCATTTTTTTTTTTTTTTTTTGTTTTTTTTTTAACCTTTTTTTTTTTTTTTTCCCCCCCCCC", exons: [ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(1), reference_start: GenomicPos(9), reference_end: GenomicPos(9), alt_strand: Plus, cigar: "1M" }, ExonData { transcript_start: TranscriptPos(1), transcript_end: TranscriptPos(17), reference_start: GenomicPos(27), reference_end: GenomicPos(42), alt_strand: Plus, cigar: "16M" }, ExonData { transcript_start: TranscriptPos(17), transcript_end: TranscriptPos(18), reference_start: GenomicPos(59), reference_end: GenomicPos(59), alt_strand: Plus, cigar: "1M" }], cds_start: 0, cds_end: 14, tx_exons: [(0, 1), (1, 17), (17, 18)], introns: [17, 16] }, pick = 6229, back = 0, len = 2, kind = 2, alt = "CC"
cc e73c22d6519724332c5cffc518c78b29133927d7c595cff83781fa40ffde9204 # shrinks to g = Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Minus, transcript_seq: "ATGTTTTTTTTTTAAAAA", genome: "AATTTTTAAAAAAAAAACATAA", exons: [ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(18), reference_start: GenomicPos(2), reference_end: GenomicPos(19), alt_strand: Minus, cigar: "18M" }], cds_start: 0, cds_end: 14, tx_exons: [(0, 18)], introns: [] }, pick = 403, unit_len = 1, copies = 0
cc cb5361ed803290db6036d2bfbd126806df0fad0741f679a2d40ffcd29de90098 # shrinks to g = Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Minus, transcript_seq: "CCTGAAGTTGCATGGAGGTAGAGCCCCAACCAAAAACGCGGCACCTTCCGGGCAATAGGTAACCCCCCCCCC", genome: "AGCCAGGGGGGGGGGGTTACCTATTGCCCGGAAGGTGCCGCGTTTTTGGTTGGGGCTCTACCTCCATGCAACTTCAGGAGCCAG", exons: [ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(72), reference_start: GenomicPos(6), reference_end: GenomicPos(77), alt_strand: Minus, cigar: "72M" }], cds_start: 11, cds_end: 61, tx_exons: [(0, 72)], introns: [] }, pick = 3720, unit_len = 1, copies = 2
cc d67fd8afbd3a68212ddbace881d8e481b7a722749906a7f3e6ad16d308583bb2 # shrinks to (seq, members, shuffled) = ("GTACGCGGCTAAC", [PlacedHgvs { start: 10, end: 12, edit: Ins { alt: Some("TGCC"), uncertain: false } }, PlacedHgvs { start: 11, end: 13, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 9, end: 12, edit: Inv { ref_: None, uncertain: false } }], [PlacedHgvs { start: 9, end: 12, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 11, end: 13, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 10, end: 12, edit: Ins { alt: Some("TGCC"), uncertain: false } }])
cc 2fafd70fbba9f8abf08b0c7342b3c22c7418a737604c2fa5cc1ba3727f9e2f7b # shrinks to (seq, members) = ("CCACCACCACCACCACCA", [PlacedHgvs { start: 13, end: 14, edit: NACopy { copy: 3, uncertain: false } }, PlacedHgvs { start: 10, end: 12, edit: Dup { ref_: None, uncertain: false } }])
cc 6e959bb0bd0ffaebc61e22dfa4139d5f6f79702e897c74a87311046011325e86 # shrinks to (seq, members) = ("TTTGGTCCTTTGAAACGTGAGCCA", [PlacedHgvs { start: 16, end: 18, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 19, end: 20, edit: NACopy { copy: 3, uncertain: false } }])
cc 5882e926080600627a4a74a2c7659b1b11d7f37373b098d3c5cea184a8425c8a # shrinks to (seq, members) = ("AAAAAAAAAAAAAAAAA", [PlacedHgvs { start: 0, end: 1, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 2, end: 3, edit: NACopy { copy: 3, uncertain: false } }])
cc d9fc8cd58e6890e5cc4f174336ff497b6e5cf0a0a5ca4f65df8e0cd085ef7713 # shrinks to (seq, members) = ("GTTTTGATAA", [PlacedHgvs { start: 7, end: 9, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 4, end: 8, edit: RefAlt { ref_: None, alt: None, uncertain: false } }])
cc 31fd3cd228e06aee4006f22936ab3d1b00fea92c9995a92c232dbfc9eb620e46 # shrinks to (seq, members) = ("GTGTTGTTGAGT", [PlacedHgvs { start: 10, end: 12, edit: Ins { alt: Some("A"), uncertain: false } }, PlacedHgvs { start: 5, end: 10, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 2, end: 7, edit: RefAlt { ref_: None, alt: None, uncertain: false } }])
cc 1dd826dbddd18b25fb3c02279761cb37922d251519b3534a9359a43c56365317 # shrinks to (seq, members) = ("AAAAAAAAA", [PlacedHgvs { start: 0, end: 1, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 5, end: 8, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 6, end: 8, edit: RefAlt { ref_: None, alt: None, uncertain: false } }])
cc 6f1739b9077d6ded215355476fa378572ffc52202a8d370376247883d88a1897 # shrinks to (seq, members) = ("TGATGATGATG", [PlacedHgvs { start: 3, end: 8, edit: RefAlt { ref_: None, alt: None, uncertain: false } }, PlacedHgvs { start: 8, end: 10, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 5, end: 8, edit: Dup { ref_: None, uncertain: false } }])
cc 0bebcaf5b13b8685865deff0a925db7b744bb9cdeb767c4f7adfe08b5f6eec12 # shrinks to (seq, members) = ("TATATATA", [PlacedHgvs { start: 4, end: 8, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 0, end: 2, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 3, end: 5, edit: RefAlt { ref_: None, alt: None, uncertain: false } }])
cc c0884103e971cb56baf746da1789abfd2f6a27d4a5369e47d5b49a961e1314fb # shrinks to (seq, members, shuffled) = ("GTCACTGC", [PlacedHgvs { start: 6, end: 7, edit: RefAlt { ref_: None, alt: Some("A"), uncertain: false } }, PlacedHgvs { start: 2, end: 7, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 2, end: 4, edit: RefAlt { ref_: None, alt: None, uncertain: false } }], [PlacedHgvs { start: 2, end: 4, edit: RefAlt { ref_: None, alt: None, uncertain: false } }, PlacedHgvs { start: 2, end: 7, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 6, end: 7, edit: RefAlt { ref_: None, alt: Some("A"), uncertain: false } }])
cc 2b636bdc04d68d183977927084c1534a6d440545504d11d76cc1468553a5ec8b # shrinks to (g, members) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Plus, transcript_seq: "TGTTTGATGGGCCCGGAGTTCATGATGATCTTGTGTGCCGAGCGATCATATAATTAAGATG", genome: "ATGCTGCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTATGGGCCCGGAGTTCATGATGATCTTGTGTGCCGAGCGATCATATAATTAAGATGATGCTGCTC", exons: [ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(1), reference_start: GenomicPos(9), reference_end: GenomicPos(9), alt_strand: Plus, cigar: "1M" }, ExonData { transcript_start: TranscriptPos(1), transcript_end: TranscriptPos(6), reference_start: GenomicPos(41), reference_end: GenomicPos(45), alt_strand: Plus, cigar: "5M" }, ExonData { transcript_start: TranscriptPos(6), transcript_end: TranscriptPos(61), reference_start: GenomicPos(71), reference_end: GenomicPos(125), alt_strand: Plus, cigar: "55M" }], cds_start: 6, cds_end: 56, tx_exons: [(0, 1), (1, 6), (6, 61)], introns: [31, 25] }, [PlacedHgvs { start: 3, end: 5, edit: Ins { alt: Some("A"), uncertain: false } }, PlacedHgvs { start: 3, end: 7, edit: Dup { ref_: None, uncertain: false } }])
cc 2beb38a6243b3471f51d41e9e3beb07131c3ccb9d80f4a044d9bea1ee52002f4 # shrinks to (g, members) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Minus, transcript_seq: "GGGATGTATATCAGCGACAACCGACCTCAGTAATGTGTGT", genome: "TCTCTCTACACACATTACTTTTTTTTTTTTTTTTTTTTTTGATGGTCGGTTGTCGCTGATATACATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTCTCT", exons: [ExonData { transcript_start: TranscriptPos(29), transcript_end: TranscriptPos(40), reference_start: GenomicPos(7), reference_end: GenomicPos(17), alt_strand: Minus, cigar: "11M" }, ExonData { transcript_start: TranscriptPos(26), transcript_end: TranscriptPos(29), reference_start: GenomicPos(39), reference_end: GenomicPos(41), alt_strand: Minus, cigar: "3M" }, ExonData { transcript_start: TranscriptPos(1), transcript_end: TranscriptPos(26), reference_start: GenomicPos(43), reference_end: GenomicPos(67), alt_strand: Minus, cigar: "25M" }, ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(1), reference_start: GenomicPos(98), reference_end: GenomicPos(98), alt_strand: Minus, cigar: "1M" }], cds_start: 3, cds_end: 32, tx_exons: [(0, 1), (1, 26), (26, 29), (29, 40)], introns: [30, 1, 21] }, [PlacedHgvs { start: 22, end: 27, edit: RefAlt { ref_: None, alt: None, uncertain: false } }])
cc 0c48178c6e770c64bc6aab2be4b68047cb89c6fda44154f2301894bf6c4ab3f9 # shrinks to (g, members) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Minus, transcript_seq: "GGCCGGTGGGATGATGTGCTATATATGCGCTGGCCCCGTTGGGGATTAAAAAAAAAAAAAAA", genome: "TACGTTTTTTTTTTTTTTTAATCCCTTTTTTTTTTTTTTTTTTTTCAACGGGGCCAGCGCATTTTTTTTATATAGCACATCATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCACCGGCCTACG", exons: [ExonData { transcript_start: TranscriptPos(41), transcript_end: TranscriptPos(62), reference_start: GenomicPos(4), reference_end: GenomicPos(24), alt_strand: Minus, cigar: "21M" }, ExonData { transcript_start: TranscriptPos(25), transcript_end: TranscriptPos(41), reference_start: GenomicPos(45), reference_end: GenomicPos(60), alt_strand: Minus, cigar: "16M" }, ExonData { transcript_start: TranscriptPos(9), transcript_end: TranscriptPos(25), reference_start: GenomicPos(68), reference_end: GenomicPos(83), alt_strand: Minus, cigar: "16M" }, ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(9), reference_start: GenomicPos(123), reference_end: GenomicPos(131), alt_strand: Minus, cigar: "9M" }], cds_start: 10, cds_end: 48, tx_exons: [(0, 9), (9, 25), (25, 41), (41, 62)], introns: [39, 7, 20] }, [PlacedHgvs { start: 34, end: 39, edit: RefAlt { ref_: None, alt: None, uncertain: false } }, PlacedHgvs { start: 37, end: 42, edit: RefAlt { ref_: None, alt: None, uncertain: false } }])
cc e65c005b7861ff4d54101fce36cba8fe1dc6139e076258fbf95c7aba0a030487 # shrinks to (seq, members) = ("GCTGTGCTCA", [PlacedHgvs { start: 5, end: 9, edit: RefAlt { ref_: Some(""), alt: Some("GAAA"), uncertain: false } }, PlacedHgvs { start: 5, end: 7, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 1, end: 6, edit: RefAlt { ref_: None, alt: None, uncertain: false } }])
cc 8c22693bf5b1aa7a32e7bf115e71f077c0d0bae03e533d01ea85ff2949c4e4d4 # shrinks to (seq, members, shuffled) = ("TTCTTCAGCGAGACTTGTAAACCG", [PlacedHgvs { start: 19, end: 23, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 7, end: 19, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 14, end: 16, edit: RefAlt { ref_: None, alt: None, uncertain: false } }, PlacedHgvs { start: 18, end: 20, edit: Ins { alt: Some("AACCTA"), uncertain: false } }], [PlacedHgvs { start: 18, end: 20, edit: Ins { alt: Some("AACCTA"), uncertain: false } }, PlacedHgvs { start: 14, end: 16, edit: RefAlt { ref_: None, alt: None, uncertain: false } }, PlacedHgvs { start: 7, end: 19, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 19, end: 23, edit: Inv { ref_: None, uncertain: false } }])
cc 8a572d7530a972067558acdbf4655b53ed2795ea2cb090e30b45c0251b8fd3a9 # shrinks to (seq, members) = ("TATTATTATTATTA", [PlacedHgvs { start: 9, end: 11, edit: Del { ref_: None, uncertain: false } }, PlacedHgvs { start: 12, end: 14, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 12, end: 13, edit: RefAlt { ref_: None, alt: Some("T"), uncertain: false } }, PlacedHgvs { start: 12, end: 14, edit: RefAlt { ref_: None, alt: None, uncertain: false } }])
cc 9b38f875793ea2c8fd98c250f1d0b4a297f03ae6dc6a3930ce3aafb004066ef2 # shrinks to (seq, members, shuffled) = ("TTATTATTATTATT", [PlacedHgvs { start: 0, end: 7, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 6, end: 8, edit: Ins { alt: Some("TCTGCG"), uncertain: false } }, PlacedHgvs { start: 8, end: 9, edit: RefAlt { ref_: None, alt: Some("C"), uncertain: false } }, PlacedHgvs { start: 2, end: 4, edit: Ins { alt: Some("CCTGG"), uncertain: false } }], [PlacedHgvs { start: 2, end: 4, edit: Ins { alt: Some("CCTGG"), uncertain: false } }, PlacedHgvs { start: 6, end: 8, edit: Ins { alt: Some("TCTGCG"), uncertain: false } }, PlacedHgvs { start: 8, end: 9, edit: RefAlt { ref_: None, alt: Some("C"), uncertain: false } }, PlacedHgvs { start: 0, end: 7, edit: Dup { ref_: None, uncertain: false } }])
cc 60bfdfbc6e474c566658c69899dd2f60834b7ba5c5aa18e26e4fef3a9dc13170 # shrinks to (g, members) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Minus, transcript_seq: "GAATGGATGGGCTTTCGTGTGCGGTAATCAATGCTTAA", genome: "ATAGAGTCTCTTAAGCATTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCGCACACGAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCATCCATTCATAGAGTCTC", exons: [ExonData { transcript_start: TranscriptPos(26), transcript_end: TranscriptPos(38), reference_start: GenomicPos(10), reference_end: GenomicPos(21), alt_strand: Minus, cigar: "12M" }, ExonData { transcript_start: TranscriptPos(11), transcript_end: TranscriptPos(26), reference_start: GenomicPos(58), reference_end: GenomicPos(72), alt_strand: Minus, cigar: "15M" }, ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(11), reference_start: GenomicPos(106), reference_end: GenomicPos(116), alt_strand: Minus, cigar: "11M" }], cds_start: 6, cds_end: 26, tx_exons: [(0, 11), (11, 26), (26, 38)], introns: [33, 36] }, [PlacedHgvs { start: 18, end: 23, edit: RefAlt { ref_: None, alt: None, uncertain: false } }, PlacedHgvs { start: 21, end: 23, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 22, end: 23, edit: RefAlt { ref_: None, alt: Some("G"), uncertain: false } }])
cc bc9660067bc750eda21ced055301d3be6248149420d6d140752625d56bb7800e # shrinks to (seq, members) = ("AAAAAAAA", [PlacedHgvs { start: 4, end: 5, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 3, end: 5, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 3, end: 5, edit: RefAlt { ref_: None, alt: None, uncertain: false } }])
cc baa422813cc9ee5ddf11fd9ec8c4bd189c772eaa9cb6fcdd87735e821b57b9e5 # shrinks to (g, members) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Plus, transcript_seq: "CCTTCATGCGTTTCCTTTGCCTCCTTAAATAATGTG", genome: "AAAAAAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCTCCTTAAATAATGTGAAAAAAA", exons: [ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(1), reference_start: GenomicPos(7), reference_end: GenomicPos(7), alt_strand: Plus, cigar: "1M" }, ExonData { transcript_start: TranscriptPos(1), transcript_end: TranscriptPos(7), reference_start: GenomicPos(42), reference_end: GenomicPos(47), alt_strand: Plus, cigar: "6M" }, ExonData { transcript_start: TranscriptPos(7), transcript_end: TranscriptPos(17), reference_start: GenomicPos(77), reference_end: GenomicPos(86), alt_strand: Plus, cigar: "10M" }, ExonData { transcript_start: TranscriptPos(17), transcript_end: TranscriptPos(36), reference_start: GenomicPos(112), reference_end: GenomicPos(130), alt_strand: Plus, cigar: "19M" }], cds_start: 5, cds_end: 31, tx_exons: [(0, 1), (1, 7), (7, 17), (17, 36)], introns: [34, 29, 25] }, [PlacedHgvs { start: 25, end: 26, edit: RefAlt { ref_: None, alt: Some("T"), uncertain: false } }, PlacedHgvs { start: 28, end: 29, edit: RefAlt { ref_: Some(""), alt: Some("C"), uncertain: false } }, PlacedHgvs { start: 24, end: 27, edit: Inv { ref_: None, uncertain: false } }])
cc 3775908ab2ea3c9305c287e76d46c6c356c8e4ad69edd7a15d2b4272ffe70e40 # shrinks to (g, members) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Plus, transcript_seq: "AGCACACAATGCGCATGTGTTACATTGCTGCACGTCTAGCTACGCACGATTGGAGCCGATAATTGGTTCACG", genome: "CACCTGAGCACACAATGCGCATGTGTTTACATTGCTGCACGTCTAGCTACGCACGATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTTTTTCCGATAATTGGTTCACGCACCTG", exons: [ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(21), reference_start: GenomicPos(6), reference_end: GenomicPos(26), alt_strand: Plus, cigar: "21M" }, ExonData { transcript_start: TranscriptPos(21), transcript_end: TranscriptPos(52), reference_start: GenomicPos(28), reference_end: GenomicPos(58), alt_strand: Plus, cigar: "31M" }, ExonData { transcript_start: TranscriptPos(52), transcript_end: TranscriptPos(55), reference_start: GenomicPos(86), reference_end: GenomicPos(88), alt_strand: Plus, cigar: "3M" }, ExonData { transcript_start: TranscriptPos(55), transcript_end: TranscriptPos(72), reference_start: GenomicPos(94), reference_end: GenomicPos(110), alt_strand: Plus, cigar: "17M" }], cds_start: 8, cds_end: 61, tx_exons: [(0, 21), (21, 52), (52, 55), (55, 72)], introns: [1, 27, 5] }, [PlacedHgvs { start: 10, end: 12, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 9, end: 13, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 10, end: 12, edit: RefAlt { ref_: None, alt: None, uncertain: false } }])
cc aba08c683c00cef4a7db4eadc469269f197cb30594a68c0fe6cd0a1fb31df132 # shrinks to (seq, members) = ("GACGACGACGACGACGAC", [PlacedHgvs { start: 8, end: 9, edit: RefAlt { ref_: None, alt: Some("C"), uncertain: false } }, PlacedHgvs { start: 8, end: 14, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 0, end: 3, edit: Del { ref_: None, uncertain: false } }, PlacedHgvs { start: 9, end: 14, edit: RefAlt { ref_: None, alt: None, uncertain: false } }])
cc 18ee330998e28f14e9bbb0b6bca1707d23109463c4782fb5326029d81727fad9 # shrinks to (g, members) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Plus, transcript_seq: "ATGGATTGTTCTTTGATCTAAGGGGGGGGGGGGGG", genome: "AGGAAACATGGATTGTTTTTTTTTTTTTTTTTTTTTTTCTTTGATTTTCTAAGGGGGGGGGGGGGGAGGAAAC", exons: [ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(10), reference_start: GenomicPos(7), reference_end: GenomicPos(16), alt_strand: Plus, cigar: "10M" }, ExonData { transcript_start: TranscriptPos(10), transcript_end: TranscriptPos(17), reference_start: GenomicPos(38), reference_end: GenomicPos(44), alt_strand: Plus, cigar: "7M" }, ExonData { transcript_start: TranscriptPos(17), transcript_end: TranscriptPos(35), reference_start: GenomicPos(48), reference_end: GenomicPos(65), alt_strand: Plus, cigar: "18M" }], cds_start: 0, cds_end: 20, tx_exons: [(0, 10), (10, 17), (17, 35)], introns: [21, 3] }, [PlacedHgvs { start: 11, end: 13, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 7, end: 12, edit: RefAlt { ref_: Some(""), alt: Some("TAATT"), uncertain: false } }])
cc 3bd83805ab43729c446745850cd3bf785798f903966e9fed97988ddcf003053c # shrinks to (seq, members, shuffled) = ("CGGACGGACGGA", [PlacedHgvs { start: 7, end: 8, edit: RefAlt { ref_: None, alt: Some("A"), uncertain: false } }, PlacedHgvs { start: 5, end: 11, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 5, end: 8, edit: RefAlt { ref_: None, alt: None, uncertain: false } }], [PlacedHgvs { start: 7, end: 8, edit: RefAlt { ref_: None, alt: Some("A"), uncertain: false } }, PlacedHgvs { start: 5, end: 11, edit: Dup { ref_: None, uncertain: false } }, PlacedHgvs { start: 5, end: 8, edit: RefAlt { ref_: None, alt: None, uncertain: false } }])
cc 007b2d3e38050aa59ec7a9a448a003509a4cc80e902638b4ece18d26058ef358 # shrinks to (g, members) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Minus, transcript_seq: "GTATGTGTGCGACAGGTCCTTAAAAAAGCAGTAGTATGAAA", genome: "CAAGAAGTTTCATACTACTGCTTTTTTTTTTTTTTTTAAGGACCTGTTTTTCGCTTTTTTTTTTTTACACATACCAAGAAG", exons: [ExonData { transcript_start: TranscriptPos(25), transcript_end: TranscriptPos(41), reference_start: GenomicPos(7), reference_end: GenomicPos(22), alt_strand: Minus, cigar: "16M" }, ExonData { transcript_start: TranscriptPos(11), transcript_end: TranscriptPos(25), reference_start: GenomicPos(33), reference_end: GenomicPos(46), alt_strand: Minus, cigar: "14M" }, ExonData { transcript_start: TranscriptPos(8), transcript_end: TranscriptPos(11), reference_start: GenomicPos(51), reference_end: GenomicPos(53), alt_strand: Minus, cigar: "3M" }, ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(8), reference_start: GenomicPos(66), reference_end: GenomicPos(73), alt_strand: Minus, cigar: "8M" }], cds_start: 2, cds_end: 22, tx_exons: [(0, 8), (8, 11), (11, 25), (25, 41)], introns: [12, 4, 10] }, [PlacedHgvs { start: 7, end: 12, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 11, end: 13, edit: RefAlt { ref_: None, alt: None, uncertain: false } }])
cc 53a96d62346f0ce1a3a7f1b31e39164afe4762ce5e4bc1272a647b5093980805 # shrinks to (g, members) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Plus, transcript_seq: "AAAAATGCATGCTGTCGTACATTTTCAGACCAAATGGTCTCGGCGGCGATAAGTGTGTGTGTGTG", genome: "TGTAAAAATGCATGCTGTCGTACATTTTCAGACCAAATGGTCTCGGCGGCGATAAGTGTGTGTGTGTGTGT", exons: [ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(65), reference_start: GenomicPos(3), reference_end: GenomicPos(67), alt_strand: Plus, cigar: "65M" }], cds_start: 4, cds_end: 51, tx_exons: [(0, 65)], introns: [] }, [PlacedHgvs { start: 20, end: 22, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 19, end: 21, edit: RefAlt { ref_: None, alt: None, uncertain: false } }, PlacedHgvs { start: 21, end: 22, edit: RefAlt { ref_: None, alt: Some("T"), uncertain: false } }])
cc 1a84ffb2647df186e2751525af0e31dd9bad97f454ae72a4aebdf6558894020a # shrinks to (g, members) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Minus, transcript_seq: "TTATTTATGCAGACACCTAAAAATTAATGA", genome: "GATCATTAATTTTTTTTTTTTTTTTTTTTAGGTGTCTGCATAAATTTTTTTTTTTTTTTTTTTTTTTTTAAGA", exons: [ExonData { transcript_start: TranscriptPos(23), transcript_end: TranscriptPos(30), reference_start: GenomicPos(2), reference_end: GenomicPos(8), alt_strand: Minus, cigar: "7M" }, ExonData { transcript_start: TranscriptPos(2), transcript_end: TranscriptPos(23), reference_start: GenomicPos(24), reference_end: GenomicPos(44), alt_strand: Minus, cigar: "21M" }, ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(2), reference_start: GenomicPos(69), reference_end: GenomicPos(70), alt_strand: Minus, cigar: "2M" }], cds_start: 6, cds_end: 26, tx_exons: [(0, 2), (2, 23), (23, 30)], introns: [24, 15] }, [PlacedHgvs { start: 27, end: 29, edit: Ins { alt: Some("G"), uncertain: false } }, PlacedHgvs { start: 18, end: 28, edit: RefAlt { ref_: Some(""), alt: Some("CTGCAT"), uncertain: false } }])
cc 284a3c63c33b7c67979486337ebc2a2609724dbed0ae7ae1b29d9f61ff284fe4 # shrinks to (seq, members, shuffled) = ("CCCCCCCCCCCCCCCCCCCC", [PlacedHgvs { start: 18, end: 20, edit: Ins { alt: Some("GGG"), uncertain: false } }, PlacedHgvs { start: 14, end: 16, edit: InsLength { min: 2, max: 2, uncertain: false } }, PlacedHgvs { start: 18, end: 20, edit: Ins { alt: Some("CAAT"), uncertain: false } }, PlacedHgvs { start: 5, end: 9, edit: NACopy { copy: 3, uncertain: false } }], [PlacedHgvs { start: 5, end: 9, edit: NACopy { copy: 3, uncertain: false } }, PlacedHgvs { start: 18, end: 20, edit: Ins { alt: Some("CAAT"), uncertain: false } }, PlacedHgvs { start: 14, end: 16, edit: InsLength { min: 2, max: 2, uncertain: false } }, PlacedHgvs { start: 18, end: 20, edit: Ins { alt: Some("GGG"), uncertain: false } }])
cc ddabb21a02c15e8585113bd4cbcbad81f7a82b2d9a3ef01d86313f9b7e5c6961 # shrinks to (g, e) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Plus, transcript_seq: "CTTCTTATGCCTCGGGGCTGTAGTAGTGGTGCACTCTTTAAGCCGAGGCGATAATATGAGTA", genome: "GAGGATCACTTCTTATGCCTCGGGGCTGTAGTAGTGGTGTTTTTTTTCACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCCGAGGCGATAATATGAGTAGAGGATCA", exons: [ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(31), reference_start: GenomicPos(8), reference_end: GenomicPos(38), alt_strand: Plus, cigar: "31M" }, ExonData { transcript_start: TranscriptPos(31), transcript_end: TranscriptPos(38), reference_start: GenomicPos(47), reference_end: GenomicPos(53), alt_strand: Plus, cigar: "7M" }, ExonData { transcript_start: TranscriptPos(38), transcript_end: TranscriptPos(62), reference_start: GenomicPos(85), reference_end: GenomicPos(108), alt_strand: Plus, cigar: "24M" }], cds_start: 6, cds_end: 53, tx_exons: [(0, 31), (31, 38), (38, 62)], introns: [8, 31] }, TxEdit { start: TxPoint { index: 28, offset: 0 }, end: TxPoint { index: 28, offset: 0 }, edit: Repeat { ref_: Some("GT"), min: 1, max: 1, uncertain: false } })
cc 33360985eb9006594f2c9d43c487ecb72f381d7540d638e40e9af52ac695e56f # shrinks to (g, e, other) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Minus, transcript_seq: "AAGCTTATGTATGGATAACGCAGTGTTGCGCATCATGCGCGAAAGCATTCCGGGGCAGGAGGGCATATAACCTCGAG", genome: "GTTAGCCCCTCTCGAGGTTATATGCCCTCCTGCCCCGGAATTCTTTCGCGCATGATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAACACTGCGTTTTTTTTTATCCATACATAAGCTTGTTAGCCCCT", exons: [ExonData { transcript_start: TranscriptPos(30), transcript_end: TranscriptPos(77), reference_start: GenomicPos(10), reference_end: GenomicPos(56), alt_strand: Minus, cigar: "47M" }, ExonData { transcript_start: TranscriptPos(17), transcript_end: TranscriptPos(30), reference_start: GenomicPos(94), reference_end: GenomicPos(106), alt_strand: Minus, cigar: "13M" }, ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(17), reference_start: GenomicPos(114), reference_end: GenomicPos(130), alt_strand: Minus, cigar: "17M" }], cds_start: 10, cds_end: 69, tx_exons: [(0, 17), (17, 30), (30, 77)], introns: [7, 37] }, TxEdit { start: TxPoint { index: 44, offset: 0 }, end: TxPoint { index: 45, offset: 0 }, edit: Ins { alt: Some("GAAAT"), uncertain: false } }, TxEdit { start: TxPoint { index: 0, offset: -10 }, end: TxPoint { index: 0, offset: -10 }, edit: RefAlt { ref_: Some("A"), alt: Some("C"), uncertain: false } }), kind = 12, at = 4037, count = 1, residues = ['L', 'G'], length = None
cc 8ad5373629d1964ced2978978de0a42432c47f909a6c330dc3a061bd18d7c50d # shrinks to (g, e, other) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Minus, transcript_seq: "GACGACGACGATGAAGTCGTGGTAAGCCCGC", genome: "TGGAGCGGGCTTACCACGACTTCATCGTCGTCGTCTGGA", exons: [ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(31), reference_start: GenomicPos(4), reference_end: GenomicPos(34), alt_strand: Minus, cigar: "31M" }], cds_start: 10, cds_end: 24, tx_exons: [(0, 31)], introns: [] }, TxEdit { start: TxPoint { index: 14, offset: 0 }, end: TxPoint { index: 22, offset: 0 }, edit: Del { ref_: None, uncertain: false } }, TxEdit { start: TxPoint { index: 0, offset: -4 }, end: TxPoint { index: 0, offset: -4 }, edit: RefAlt { ref_: Some("T"), alt: Some("A"), uncertain: false } }), kind = 13, at = 3550, count = 3, residues = ['A', 'H', 'T', 'A'], length = None
cc 34a4c5caea3112b040655721f3cf58207f246b8283547f5ab032ff08f3b8f58c # shrinks to (g, e, other) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Plus, transcript_seq: "AGATGCGATGAAAATTGTTTCGTCATTCAAGAATCTGTTCTACCTCCCAACTGTGTAAAAAAA", genome: "CCTCCTAGATGCGATGAAAATTGTTTCGTCATTCAAGAATCTGTTCTACCTCCCAACTGTGTAAAAAAACCTCCT", exons: [ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(63), reference_start: GenomicPos(6), reference_end: GenomicPos(68), alt_strand: Plus, cigar: "63M" }], cds_start: 7, cds_end: 57, tx_exons: [(0, 63)], introns: [] }, TxEdit { start: TxPoint { index: 7, offset: 0 }, end: TxPoint { index: 57, offset: 0 }, edit: Del { ref_: None, uncertain: false } }, TxEdit { start: TxPoint { index: 0, offset: -6 }, end: TxPoint { index: 0, offset: -6 }, edit: RefAlt { ref_: Some("C"), alt: Some("G"), uncertain: false } }), kind = 9, at = 875, count = 1, residues = ['P'], length = Some(4)
cc 6d8173f74b098b4f1068735e768f358109f56b10fd6afab8dae302cddb3a549c # shrinks to (g, e, other) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Minus, transcript_seq: "CAGAAGCTATGCGGCGAGACTTGGGCCAGATATTACTTAGGCATTCTCCGTGGCTATAATACTTCTGTCGTCGTCGTCCGATTAAA", genome: "ATGGCCCTTTAATCGGACGACGACGACAGAAGTATTATAGCCACGGAGAATTTTTTTTTTGCCTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTATATCTGGCCCAAGTCTCGCCGCATAGCTTCTGATGGCCC", exons: [ExonData { transcript_start: TranscriptPos(42), transcript_end: TranscriptPos(86), reference_start: GenomicPos(7), reference_end: GenomicPos(50), alt_strand: Minus, cigar: "44M" }, ExonData { transcript_start: TranscriptPos(37), transcript_end: TranscriptPos(42), reference_start: GenomicPos(60), reference_end: GenomicPos(64), alt_strand: Minus, cigar: "5M" }, ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(37), reference_start: GenomicPos(103), reference_end: GenomicPos(139), alt_strand: Minus, cigar: "37M" }], cds_start: 8, cds_end: 58, tx_exons: [(0, 37), (37, 42), (42, 86)], introns: [38, 9] }, TxEdit { start: TxPoint { index: 8, offset: 0 }, end: TxPoint { index: 62, offset: 0 }, edit: Inv { ref_: None, uncertain: false } }, TxEdit { start: TxPoint { index: 0, offset: -7 }, end: TxPoint { index: 0, offset: -7 }, edit: RefAlt { ref_: Some("G"), alt: Some("T"), uncertain: false } }), kind = 6, at = 6079, count = 1, residues = ['T', 'V', 'T'], length = Some(6)
cc 0ce9d81c67a1bae7188533fa82082eb438fd986369d8841a6136a159bfbeb9b5 # shrinks to (g, members) = (Gene { ac: "NM_PROP.1", reference_ac: "NC_PROP.1", strand: Minus, transcript_seq: "AAATGAAGGTTTTAATGGTTAATCCCCAAAGAGCCGTTTCTGGTAAGCGGTAAAGCGTGCA", genome: "GGGGGGTGCACGCTTTACCGCTTACCAGAAACGGCTCTTTGGGGATTAACCATTAAAACCTTCATTTGGGGGG", exons: [ExonData { transcript_start: TranscriptPos(0), transcript_end: TranscriptPos(61), reference_start: GenomicPos(6), reference_end: GenomicPos(66), alt_strand: Minus, cigar: "61M" }], cds_start: 2, cds_end: 52, tx_exons: [(0, 61)], introns: [] }, [PlacedHgvs { start: 15, end: 17, edit: Inv { ref_: None, uncertain: false } }, PlacedHgvs { start: 10, end: 11, edit: RefAlt { ref_: None, alt: Some("A"), uncertain: false } }])
