LICENSE
README.md
pyproject.toml
setup.cfg
src/isolaser/__init__.py
src/isolaser/annotate_reads.py
src/isolaser/combine_vcf.py
src/isolaser/convert_gff_to_fasta.py
src/isolaser/extract_exon_parts.py
src/isolaser/ggsashimi.py
src/isolaser/gqv_bam_utils.py
src/isolaser/gqv_dbg_utils.py
src/isolaser/gqv_gff_utils.py
src/isolaser/gqv_glm.py
src/isolaser/gqv_phaser.py
src/isolaser/gqv_software_management.py
src/isolaser/gqv_utils.py
src/isolaser/gqv_vartool.py
src/isolaser/isolaser.py
src/isolaser/isolaser_filter.py
src/isolaser/isolaser_joint.py
src/isolaser/nigiri_parse_mi_file.py
src/isolaser/split_bam_by_allele.py
src/isolaser.egg-info/PKG-INFO
src/isolaser.egg-info/SOURCES.txt
src/isolaser.egg-info/dependency_links.txt
src/isolaser.egg-info/entry_points.txt
src/isolaser.egg-info/requires.txt
src/isolaser.egg-info/top_level.txt
src/isolaser/glm/__init__.py
src/isolaser/glm/ami_null.polyfits.ar_psi_bins.pickle
src/isolaser/glm/gm12878_sequel2.MERGED.feature_matrix.tab.proc_1.csv.f1.glm.pickle
src/isolaser/glm/merged.GTEX.MERGED.ALLCHR.feature_matrix.tab.proc_1.csv.f1.glm.pickle
src/isolaser/glm/mi_testing.training_summary.normalfits.pickle
src/isolaser/glm/pacbio.filtered_hepg2.txt.DELETION.glm.pickle
src/isolaser/glm/pacbio.filtered_hepg2.txt.INSERTION.glm.pickle
src/isolaser/glm/pacbio.filtered_hepg2.txt.SNP.glm.pickle
src/isolaser/glm/smartseq2_gm12878_DS.txt.DELETION.glm.pickle
src/isolaser/glm/smartseq2_gm12878_DS.txt.INSERTION.glm.pickle
src/isolaser/glm/smartseq2_gm12878_DS.txt.SNP.glm.pickle
src/isolaser/glm/train.pacbio.DELETION.glm.pickle
src/isolaser/glm/train.pacbio.INSERTION.glm.pickle
src/isolaser/glm/train.pacbio.SNP.glm.pickle
src/isolaser/nigiri_pkg/__init__.py
src/isolaser/nigiri_pkg/ggsashimi.py
src/isolaser/nigiri_pkg/parse_joint_file.py
src/isolaser/nigiri_pkg/split_bam_by_allele.py