LICENSE
MANIFEST.in
README.md
setup.py
bioscout/__init__.py
bioscout/__main__.py
bioscout/cli.py
bioscout/pipeline.py
bioscout/scale_interactive.py
bioscout/settings.py
bioscout.egg-info/PKG-INFO
bioscout.egg-info/SOURCES.txt
bioscout.egg-info/dependency_links.txt
bioscout.egg-info/entry_points.txt
bioscout.egg-info/requires.txt
bioscout.egg-info/top_level.txt
bioscout/config/__init__.py
bioscout/config/config_manager.py
bioscout/config/default_config.yaml
bioscout/config/trial_settings_template.xml
bioscout/core/__init__.py
bioscout/core/analysis.py
bioscout/core/analysis_runner.py
bioscout/core/batch.py
bioscout/core/jcf_contributions.py
bioscout/core/project_analysis.py
bioscout/core/status.py
bioscout/core/subject_registry.py
bioscout/devtools/__init__.py
bioscout/devtools/bench.py
bioscout/devtools/dependency_installer.py
bioscout/devtools/envcheck.py
bioscout/devtools/md2pdf.py
bioscout/devtools/qrgen.py
bioscout/devtools/run_check.py
bioscout/devtools/settings_updater.py
bioscout/emg/__init__.py
bioscout/emg/analysis.py
bioscout/emg/channels.py
bioscout/emg/emg.py
bioscout/emg/filter.py
bioscout/emg/normalise.py
bioscout/init/__init__.py
bioscout/init/project_config.py
bioscout/lab/__init__.py
bioscout/lab/subject_profile.py
bioscout/lab/tools.py
bioscout/lab/web_engine.py
bioscout/lab/load_tracking/__init__.py
bioscout/lab/load_tracking/connect.py
bioscout/lab/load_tracking/contraction.py
bioscout/lab/load_tracking/fatigue.py
bioscout/lab/load_tracking/importers.py
bioscout/lab/load_tracking/metrics.py
bioscout/lab/load_tracking/ml_interface.py
bioscout/lab/load_tracking/muscle_map.py
bioscout/lab/load_tracking/report.py
bioscout/lab/load_tracking/sample_data.py
bioscout/lab/load_tracking/shot_analysis.py
bioscout/lab/load_tracking/strava_api.py
bioscout/lab/load_tracking/tracker.py
bioscout/lab/load_tracking/tracking_store.py
bioscout/lab/load_tracking/zepp_cloud.py
bioscout/lab/record/__init__.py
bioscout/lab/record/screen_record.py
bioscout/lab/record/video.py
bioscout/lab/record/video_analyzer.py
bioscout/lab/record/video_recorder.py
bioscout/lab/record/webvideo.py
bioscout/model/__init__.py
bioscout/model/__main__.py
bioscout/model/cli.py
bioscout/model/geometry.py
bioscout/model/io.py
bioscout/model/measure.py
bioscout/model/muscle_optimize.py
bioscout/model/opensim_base.py
bioscout/model/report.py
bioscout/model/scale_muscle_forces.py
bioscout/model/torsion_tool.py
bioscout/model/verify.py
bioscout/model/edit/__init__.py
bioscout/model/edit/__main__.py
bioscout/model/edit/cli.py
bioscout/model/edit/introspect.py
bioscout/model/edit/naming.py
bioscout/model/edit/osim_ops.py
bioscout/model/edit/prompt.py
bioscout/model/edit/recipe.py
bioscout/model/edit/run.py
bioscout/model/edit/spec.py
bioscout/model/edit/ops/__init__.py
bioscout/model/edit/ops/coordinates.py
bioscout/model/edit/ops/inspect.py
bioscout/model/edit/ops/markers.py
bioscout/model/edit/ops/moment_arms.py
bioscout/model/edit/ops/reserves.py
bioscout/model/edit/ops/scale.py
bioscout/model/edit/ops/strength.py
bioscout/model/inspect/__init__.py
bioscout/model/inspect/__main__.py
bioscout/model/inspect/compare_settings.py
bioscout/model/inspect/core.py
bioscout/model/inspect/cross_body.py
bioscout/model/inspect/discontinuity.py
bioscout/model/inspect/fl_fv_report.py
bioscout/model/inspect/fl_fv_surface.py
bioscout/model/inspect/geometry.py
bioscout/model/inspect/literature_jcf.py
bioscout/model/inspect/logutil.py
bioscout/model/inspect/model_ma_check.py
bioscout/model/inspect/moment_arm_motion.py
bioscout/model/inspect/moment_arms.py
bioscout/model/inspect/multi_model.py
bioscout/model/inspect/muscle_checker.py
bioscout/model/inspect/muscle_length_validation.py
bioscout/model/inspect/paths.py
bioscout/model/inspect/plotting.py
bioscout/model/inspect/radius_reduce.py
bioscout/model/inspect/run_moment_arm_inspection.py
bioscout/model/inspect/run_muscle_checker.py
bioscout/model/inspect/strength.py
bioscout/model/inspect/validate_against_literature.py
bioscout/model/inspect/validation.py
bioscout/model/inspect/wrap_fixer.py
bioscout/model/inspect/validation/architecture_reference_bands.csv
bioscout/model/inspect/validation/architecture_reference_params.csv
bioscout/model/inspect/validation/literature_curves.csv
bioscout/model/inspect/validation/literature_manifest.json
bioscout/model/inspect/validation/literature_moment_arms.csv
bioscout/model/inspect/validation/literature_strength.csv
bioscout/model/inspect/validation/muscle_functions.csv
bioscout/model/inspect/validation/squat_curves.csv
bioscout/model/moment_arms/__init__.py
bioscout/model/moment_arms/__main__.py
bioscout/model/moment_arms/cli.py
bioscout/model/moment_arms/core.py
bioscout/model/moment_arms/inspection.py
bioscout/model/moment_arms/paths.py
bioscout/model/moment_arms/solve.py
bioscout/model/moment_arms/volumes.py
bioscout/model/moment_arms/wraps.py
bioscout/model/scale/__init__.py
bioscout/model/scale/measurements.py
bioscout/model/scale/model_scaler.py
bioscout/model/scale/osim_scale.py
bioscout/model/tps/README.md
bioscout/model/tps/__init__.py
bioscout/model/tps/__main__.py
bioscout/model/tps/_tps_backend.py
bioscout/model/tps/axes.py
bioscout/model/tps/bioscout_adapter.py
bioscout/model/tps/cli.py
bioscout/model/tps/config.py
bioscout/model/tps/geometry.py
bioscout/model/tps/landmarks.py
bioscout/model/tps/landmarks_cli.py
bioscout/model/tps/landmarks_from_mri.py
bioscout/model/tps/logging_utils.py
bioscout/model/tps/model_compat.py
bioscout/model/tps/osim_format.py
bioscout/model/tps/osim_model.py
bioscout/model/tps/pipeline.py
bioscout/model/tps/recording.py
bioscout/model/tps/scaling.py
bioscout/model/tps/tps.py
bioscout/model/tps/data/config.example.yaml
bioscout/model/tps/data/markers_and_bone_markers_in_bodies.xml
bioscout/models/Full_Body_with_ball.osim
bioscout/models/GPK_v4_016.osim
bioscout/models/Neck_model.osim
bioscout/models/README.txt
bioscout/models/Rajagopal2015.osim
bioscout/models/__init__.py
bioscout/models/arm26_ball.osim
bioscout/models/force_model.py
bioscout/models/Digital Athlete/Digital_Athlete.osim
bioscout/plot/__init__.py
bioscout/plot/activation_dynamics.py
bioscout/plot/collings.py
bioscout/plot/compare.py
bioscout/plot/config.py
bioscout/plot/emg_figure.py
bioscout/plot/figures.py
bioscout/plot/jcf_coverage.py
bioscout/plot/jcf_direction.py
bioscout/plot/kinematics.py
bioscout/plot/muscle_moments_task.py
bioscout/plot/summary.py
bioscout/plot/task_figure.py
bioscout/plot/tidy.py
bioscout/plot/work.py
bioscout/session/__init__.py
bioscout/session/config.py
bioscout/session/events.py
bioscout/session/events.yaml
bioscout/session/exportC3D.py
bioscout/session/form.py
bioscout/session/grf_check.py
bioscout/session/iteration.py
bioscout/session/layout.py
bioscout/session/motion_detect.py
bioscout/session/paths.py
bioscout/session/recording.py
bioscout/session/stage.py
bioscout/session/validation.py
bioscout/session/windows.py
bioscout/session/movement_detector/__init__.py
bioscout/session/movement_detector/classifier.py
bioscout/session/movement_detector/cycle_runs.py
bioscout/session/movement_detector/detector.py
bioscout/session/movement_detector/features.py
bioscout/session/movement_detector/gap_fill.py
bioscout/session/movement_detector/mesh_convert.py
bioscout/session/movement_detector/mesh_from_video.py
bioscout/session/movement_detector/mesh_rig.py
bioscout/session/movement_detector/mocap.py
bioscout/session/movement_detector/session.py
bioscout/setup_files/IK_task_set.xml
bioscout/setup_files/actuators_so.xml
bioscout/setup_files/calibrationCfg.xml
bioscout/setup_files/calibrationCfg_ceinms-nn_hybrid.xml
bioscout/setup_files/calibrationSetup_ceinms-nn_hybrid.xml
bioscout/setup_files/ceinms_cfg.xml
bioscout/setup_files/ceinms_cfg_optimise.xml
bioscout/setup_files/excitationGenerator.xml
bioscout/setup_files/externalloads.xml
bioscout/setup_files/inputData.xml
bioscout/setup_files/markers_FAIS.xml
bioscout/setup_files/markers_pyCGM.xml
bioscout/setup_files/setup_CEINMS.xml
bioscout/setup_files/setup_ID.xml
bioscout/setup_files/setup_IK.xml
bioscout/setup_files/setup_JRA.xml
bioscout/setup_files/setup_MA.xml
bioscout/setup_files/setup_SO.xml
bioscout/setup_files/setup_ceinms_exe.xml
bioscout/setup_files/setup_ceinms_optimise.xml
bioscout/setup_files/setup_scale.xml
bioscout/setup_files/subjectUncalibrated.xml
bioscout/simulate/__init__.py
bioscout/simulate/fast_ma.py
bioscout/simulate/gapfill.py
bioscout/simulate/jra_files.py
bioscout/simulate/opensim.py
bioscout/simulate/so_actuators.py
bioscout/simulate/so_files.py
bioscout/simulate/ceinms/__init__.py
bioscout/simulate/ceinms/commands.py
bioscout/simulate/ceinms/configs.py
bioscout/simulate/ceinms/modes.py
bioscout/simulate/ceinms/plot.py
bioscout/simulate/ceinms/shared.py
bioscout/simulate/ceinms/bin/CEINMS.exe
bioscout/simulate/ceinms/bin/CEINMSoptimise.exe
bioscout/simulate/ceinms/bin/CHANGELOG.txt
bioscout/simulate/ceinms/bin/asmjit.dll
bioscout/simulate/ceinms/bin/c10.dll
bioscout/simulate/ceinms/bin/ceinms-nn-calibrate.exe
bioscout/simulate/ceinms/bin/concrt140.dll
bioscout/simulate/ceinms/bin/fbgemm.dll
bioscout/simulate/ceinms/bin/fbjni.dll
bioscout/simulate/ceinms/bin/libiomp5md.dll
bioscout/simulate/ceinms/bin/libiompstubs5md.dll
bioscout/simulate/ceinms/bin/msvcp140.dll
bioscout/simulate/ceinms/bin/msvcp140_1.dll
bioscout/simulate/ceinms/bin/msvcp140_2.dll
bioscout/simulate/ceinms/bin/msvcp140_atomic_wait.dll
bioscout/simulate/ceinms/bin/msvcp140_codecvt_ids.dll
bioscout/simulate/ceinms/bin/pytorch_jni.dll
bioscout/simulate/ceinms/bin/torch.dll
bioscout/simulate/ceinms/bin/torch_cpu.zip
bioscout/simulate/ceinms/bin/torch_global_deps.dll
bioscout/simulate/ceinms/bin/uv.dll
bioscout/simulate/ceinms/bin/vcruntime140.dll
bioscout/simulate/ceinms/bin/vcruntime140_1.dll
bioscout/simulate/ceinms/bin/xerces-c_3_1_vc100.dll
bioscout/simulate/mew/__init__.py
bioscout/simulate/mew/__main__.py
bioscout/simulate/mew/analyser.py
bioscout/simulate/mew/bioscout_adapter.py
bioscout/simulate/mew/calibrate.py
bioscout/simulate/mew/compare.py
bioscout/simulate/mew/excitation.py
bioscout/simulate/mew/geometry.py
bioscout/simulate/mew/io_ports.py
bioscout/simulate/mew/jcf.py
bioscout/simulate/mew/ml.py
bioscout/simulate/mew/mtu.py
bioscout/simulate/mew/pipeline.py
bioscout/simulate/mew/solver.py
bioscout/simulate/mew/tiers.py
bioscout/simulate/mew/types.py
bioscout/simulate/mew/tests/__init__.py
bioscout/simulate/mew/tests/synthetic.py
bioscout/simulate/mew/tests/test_end_to_end.py
bioscout/simulate/mrs/__init__.py
bioscout/simulate/mrs/cli.py
bioscout/simulate/mrs/config.py
bioscout/simulate/mrs/io.py
bioscout/simulate/mrs/run_mrs.m
bioscout/simulate/mrs/runner.py
bioscout/tests/__init__.py
bioscout/tests/__main__.py
bioscout/tests/test_calibration_configs.py
bioscout/tests/test_calibration_nesting.py
bioscout/tests/test_calibration_optimiser.py
bioscout/tests/test_cli.py
bioscout/tests/test_emg_analysis.py
bioscout/tests/test_emg_filter.py
bioscout/tests/test_emg_gain.py
bioscout/tests/test_emg_maps.py
bioscout/tests/test_file_edit.py
bioscout/tests/test_gapfill.py
bioscout/tests/test_knee_pipeline.py
bioscout/tests/test_logger_signature.py
bioscout/tests/test_logging.py
bioscout/tests/test_measure_coverage.py
bioscout/tests/test_mesh_rig.py
bioscout/tests/test_mew.py
bioscout/tests/test_model.py
bioscout/tests/test_model_edit.py
bioscout/tests/test_motion_detect.py
bioscout/tests/test_path_fixes.py
bioscout/tests/test_paths.py
bioscout/tests/test_plot.py
bioscout/tests/test_plot_kinematics.py
bioscout/tests/test_project_config.py
bioscout/tests/test_project_roster.py
bioscout/tests/test_run_check.py
bioscout/tests/test_session_form.py
bioscout/tests/test_session_layout_modules.py
bioscout/tests/test_session_paths.py
bioscout/tests/test_uncalibrated_execution.py
bioscout/tests/test_uncalibrated_per_iteration.py
bioscout/tests/test_validation_paths.py
bioscout/tests/tps_personalise/__init__.py
bioscout/tests/tps_personalise/test_assembly.py
bioscout/tests/tps_personalise/test_config.py
bioscout/tests/tps_personalise/test_geometry.py
bioscout/tests/tps_personalise/test_landmarks_from_mri.py
bioscout/tests/tps_personalise/test_loaders.py
bioscout/tests/tps_personalise/test_osim_format.py
bioscout/tests/tps_personalise/test_tps.py
bioscout/utils/__init__.py
bioscout/utils/analyse.py
bioscout/utils/app_window.png
bioscout/utils/file_edit.py
bioscout/utils/filters.py
bioscout/utils/helpers.py
bioscout/utils/io.py
bioscout/utils/logger.py
bioscout/utils/logo.png
bioscout/utils/paths.py
bioscout/utils/platypus.jpg
bioscout/utils/platypus_sad.jpg
bioscout/utils/plotting.py
bioscout/utils/resource_cleanup.py
bioscout/utils/shared.py
bioscout/utils/shot_analysis_card.png
bioscout/utils/stats.py
bioscout/utils/text_prints.py
bioscout/utils/xml_utils.py