# Python venv
.venv/

# IDEs
.idea/
.vscode/

# macOS
.DS_Store

# folders and files created by Operon
build/
dist/
logs/
raw/
standardized/
qc/
# not you, qc module
# see commit '0f6a72f5'
!operon/qc/
analysis/
reports/
releases/
examples/
metadata/

# SQLite db (and any changes made before applying checkpoint. from operon)
*.sqlite
*.sqlite-wal
*.sqlite-shm

# local test matrix (for scripts/setup-test-matrix.sh and scripts/run-test-matrix.sh)
.matrix/

# Cython building artifects in the QC module
operon/qc/_parsers.c
operon/qc/_alignment.c
*.so

# .pyc/o/d
__pycache__/
*.py[cod]

# generated by setuptools (`pip install -e .`)
*.egg-info/

# test result report
junit.xml

# original coverage result
.coverage

# coverage report
cobertura.xml

# coverage html
htmlcov/

# Sphinx build output
/docs/_build/

# other files we don't want be recorded by git
/others/
