CITATION.cff
LICENSE
MANIFEST.in
NOTICE
README.md
README_en.md
pyproject.toml
setup.py
config/README_CONFIG.md
config/auxiliary/config_icc_analysis.yaml
config/auxiliary/config_icc_demo.yaml
config/auxiliary/config_icc_minimal.yaml
config/dicom_sort/config_sort_dicom.yaml
config/feature_extraction/config_extract_features.yaml
config/feature_extraction/config_extract_features_demo.yaml
config/feature_extraction/config_extract_features_minimal.yaml
config/habitat/config_habitat_direct_pooling.yaml
config/habitat/config_habitat_direct_pooling_gmm_aic.yaml
config/habitat/config_habitat_direct_pooling_predict.yaml
config/habitat/config_habitat_msd_demo.yaml
config/habitat/config_habitat_one_step_elbow_train.yaml
config/habitat/config_habitat_one_step_gmm_bic.yaml
config/habitat/config_habitat_one_step_raw_concat_predict.yaml
config/habitat/config_habitat_one_step_raw_concat_train.yaml
config/habitat/config_habitat_one_step_silhouette_train.yaml
config/habitat/config_habitat_one_step_voxel_radiomics_predict.yaml
config/habitat/config_habitat_one_step_voxel_radiomics_train.yaml
config/habitat/config_habitat_pooling_voxel_radiomics_predict.yaml
config/habitat/config_habitat_pooling_voxel_radiomics_train.yaml
config/habitat/config_habitat_two_step.yaml
config/habitat/config_habitat_two_step_cli_demo.yaml
config/habitat/config_habitat_two_step_fixed_n_train.yaml
config/habitat/config_habitat_two_step_gmm_bic.yaml
config/habitat/config_habitat_two_step_kmeans_silhouette.yaml
config/habitat/config_habitat_two_step_minimal.yaml
config/habitat/config_habitat_two_step_predict.yaml
config/habitat/config_habitat_two_step_supervoxel_gmm_train.yaml
config/habitat/config_habitat_two_step_supervoxel_radiomics_predict.yaml
config/habitat/config_habitat_two_step_supervoxel_radiomics_train.yaml
config/habitat/config_habitat_two_step_supervoxel_slic.yaml
config/habitat/config_habitat_two_step_v1.yaml
config/habitat/config_habitat_two_step_voxel_radiomics_predict.yaml
config/habitat/config_habitat_two_step_voxel_radiomics_train.yaml
config/habitat/config_habitat_two_step_wsl.yaml
config/habitat/file_habitat.yaml
config/habitat/file_habitat_demo.yaml
config/habitat/file_habitat_registered_single_roi.yaml
config/machine_learning/config_machine_learning.yaml
config/machine_learning/config_machine_learning_clinical.yaml
config/machine_learning/config_machine_learning_clinical_smote.yaml
config/machine_learning/config_machine_learning_clinical_stratified.yaml
config/machine_learning/config_machine_learning_kfold.yaml
config/machine_learning/config_machine_learning_kfold_demo.yaml
config/machine_learning/config_machine_learning_kfold_minimal.yaml
config/machine_learning/config_machine_learning_multi_tables_demo.yaml
config/machine_learning/config_machine_learning_predict.yaml
config/machine_learning/config_machine_learning_radiomics.yaml
config/machine_learning/config_machine_learning_radiomics_icc_demo.yaml
config/machine_learning/config_machine_learning_radiomics_minimal.yaml
config/machine_learning/config_machine_learning_radiomics_variance_only.yaml
config/machine_learning/config_machine_learning_steps_v1.yaml
config/model_comparison/config_model_comparison.yaml
config/model_comparison/config_model_comparison_demo.yaml
config/model_comparison/config_model_comparison_minimal.yaml
config/model_comparison/config_model_comparison_single_radiomics.yaml
config/preprocessing/config_image_preprocessing.yaml
config/preprocessing/config_image_preprocessing_dcm2nii.yaml
config/preprocessing/config_preprocessing_dcm2nii_demo.yaml
config/preprocessing/config_preprocessing_demo.yaml
config/preprocessing/config_preprocessing_demo_elastix.yaml
config/preprocessing/config_preprocessing_demo_wsl.yaml
config/preprocessing/config_preprocessing_minimal.yaml
config/preprocessing/config_preprocessing_n4_reg_resample_zscore.yaml
config/preprocessing/config_preprocessing_n4_resample_registration.yaml
config/preprocessing/config_preprocessing_resample_only.yaml
config/preprocessing/files_preprocessing.yaml
config/preprocessing/files_preprocessing_dcm2nii_demo.yaml
config/preprocessing/files_preprocessing_demo.yaml
config/preprocessing/image_files.yaml
config/radiomics/config_traditional_radiomics.yaml
config/radiomics/config_traditional_radiomics_minimal.yaml
config/radiomics/parameter.yaml
config/radiomics/parameter_basic.yaml
config/radiomics/parameter_habitat.yaml
config/radiomics/parameter_with_filters.yaml
config/radiomics/params_supervoxel_radiomics.yaml
config/radiomics/params_voxel_radiomics.yaml
habit/__init__.py
habit/__main__.py
habit/_feature_trees.py
habit/_protocols.py
habit/_public_api.py
habit/_table_protocols.py
habit/_version.py
habit/cli.py
habit/common.py
habit/exceptions.py
habit/py.typed
habit/kernels/radiomics/cext/src/_sv_cmatrices.c
habit/kernels/radiomics/cext/src/sv_cmatrices.c
habit/adapters/__init__.py
habit/adapters/directory.py
habit/adapters/extract_io.py
habit/adapters/habitat_image_writer.py
habit/adapters/icc_io.py
habit/adapters/image_refs.py
habit/adapters/preprocessing_io.py
habit/adapters/radiomics_io.py
habit/adapters/writers.py
habit/api/__init__.py
habit/api/analysis.py
habit/api/contracts.py
habit/api/demo_config.py
habit/api/dicom_sort.py
habit/api/exceptions.py
habit/api/habitat.py
habit/api/image.py
habit/api/machine_learning.py
habit/api/plugins.py
habit/api/preprocessing.py
habit/api/provenance.py
habit/api/radiomics.py
habit/api/registry.py
habit/api/utils.py
habit/classification/__init__.py
habit/classification/_base.py
habit/classification/autogluon.py
habit/classification/models.py
habit/classification/registry.py
habit/combiners/__init__.py
habit/combiners/_base.py
habit/combiners/arithmetic.py
habit/combiners/concat.py
habit/combiners/expression.py
habit/combiners/kinetic.py
habit/combiners/registry.py
habit/combiners/weighted.py
habit/commands/__init__.py
habit/commands/cmd_check_config.py
habit/commands/cmd_compare.py
habit/commands/cmd_copy_demo_config.py
habit/commands/cmd_dicom_info.py
habit/commands/cmd_extract_features.py
habit/commands/cmd_fetch_demo.py
habit/commands/cmd_habitat.py
habit/commands/cmd_icc.py
habit/commands/cmd_list_components.py
habit/commands/cmd_merge_csv.py
habit/commands/cmd_migrate_config.py
habit/commands/cmd_ml.py
habit/commands/cmd_preprocess.py
habit/commands/cmd_radiomics.py
habit/commands/cmd_sort_dicom.py
habit/commands/cmd_view.py
habit/commands/common.py
habit/compat/__init__.py
habit/compat/config_validator.py
habit/compat/configurator_base.py
habit/compat/dicom_sort_runner.py
habit/compat/legacy_core.py
habit/compat/plugin_registries.py
habit/compat/registry_facade.py
habit/compat/engines/__init__.py
habit/compat/engines/habitat_analysis/__init__.py
habit/compat/engines/habitat_analysis/config_schemas.py
habit/compat/engines/habitat_analysis/configurator.py
habit/compat/engines/habitat_analysis/habitat_analysis.py
habit/compat/engines/habitat_analysis/run.py
habit/compat/engines/habitat_analysis/checkpoint/__init__.py
habit/compat/engines/habitat_analysis/checkpoint/manager.py
habit/compat/engines/habitat_analysis/checkpoint/recipe.py
habit/compat/engines/habitat_analysis/checkpoint/stage.py
habit/compat/engines/habitat_analysis/checkpoint/step.py
habit/compat/engines/habitat_analysis/clustering/__init__.py
habit/compat/engines/habitat_analysis/clustering/base_clustering.py
habit/compat/engines/habitat_analysis/clustering/cluster_search_parallel.py
habit/compat/engines/habitat_analysis/clustering/cluster_validation_methods.py
habit/compat/engines/habitat_analysis/clustering/custom_clustering_template.py
habit/compat/engines/habitat_analysis/clustering/gmm_clustering.py
habit/compat/engines/habitat_analysis/clustering/kmeans_clustering.py
habit/compat/engines/habitat_analysis/clustering/slic_clustering.py
habit/compat/engines/habitat_analysis/clustering/test_validation_methods.py
habit/compat/engines/habitat_analysis/clustering_features/__init__.py
habit/compat/engines/habitat_analysis/clustering_features/base_extractor.py
habit/compat/engines/habitat_analysis/clustering_features/concat_feature_extractor.py
habit/compat/engines/habitat_analysis/clustering_features/custom_feature_extractor_template.py
habit/compat/engines/habitat_analysis/clustering_features/feature_expression_parser.py
habit/compat/engines/habitat_analysis/clustering_features/feature_extractor_factory.py
habit/compat/engines/habitat_analysis/clustering_features/kinetic_feature_extractor.py
habit/compat/engines/habitat_analysis/clustering_features/local_entropy_extractor.py
habit/compat/engines/habitat_analysis/clustering_features/mean_voxel_features_extractor.py
habit/compat/engines/habitat_analysis/clustering_features/method_binding_validation.py
habit/compat/engines/habitat_analysis/clustering_features/method_param_spec.py
habit/compat/engines/habitat_analysis/clustering_features/my_feature_extractor.py
habit/compat/engines/habitat_analysis/clustering_features/raw_feature_extractor.py
habit/compat/engines/habitat_analysis/clustering_features/supervoxel_radiomics_extractor.py
habit/compat/engines/habitat_analysis/clustering_features/test_parser.py
habit/compat/engines/habitat_analysis/clustering_features/test_supervoxel_parser.py
habit/compat/engines/habitat_analysis/clustering_features/voxel_radiomics_extractor.py
habit/compat/engines/habitat_analysis/feature_preprocessing/__init__.py
habit/compat/engines/habitat_analysis/feature_preprocessing/base_preprocessing.py
habit/compat/engines/habitat_analysis/feature_preprocessing/builtin_methods.py
habit/compat/engines/habitat_analysis/feature_preprocessing/custom_preprocessing_template.py
habit/compat/engines/habitat_analysis/feature_preprocessing/dataframe_utils.py
habit/compat/engines/habitat_analysis/feature_preprocessing/method_config_utils.py
habit/compat/engines/habitat_analysis/feature_preprocessing/pipeline.py
habit/compat/engines/habitat_analysis/feature_preprocessing/preprocessing_state.py
habit/compat/engines/habitat_analysis/feature_preprocessing/value_transforms.py
habit/compat/engines/habitat_analysis/pipelines/__init__.py
habit/compat/engines/habitat_analysis/pipelines/base_pipeline.py
habit/compat/engines/habitat_analysis/pipelines/habitat_subject_data.py
habit/compat/engines/habitat_analysis/pipelines/pipeline_serialization.py
habit/compat/engines/habitat_analysis/pipelines/steps/__init__.py
habit/compat/engines/habitat_analysis/pipelines/steps/group_clustering.py
habit/compat/engines/habitat_analysis/pipelines/steps/group_preprocessing.py
habit/compat/engines/habitat_analysis/pipelines/steps/individual_clustering.py
habit/compat/engines/habitat_analysis/pipelines/steps/individual_preprocessing.py
habit/compat/engines/habitat_analysis/pipelines/steps/mean_voxel_features.py
habit/compat/engines/habitat_analysis/pipelines/steps/supervoxel_combination.py
habit/compat/engines/habitat_analysis/pipelines/steps/supervoxel_feature_extraction.py
habit/compat/engines/habitat_analysis/pipelines/steps/supervoxel_feature_merge.py
habit/compat/engines/habitat_analysis/pipelines/steps/voxel_concatenation.py
habit/compat/engines/habitat_analysis/pipelines/steps/voxel_feature_extraction.py
habit/compat/engines/habitat_analysis/services/__init__.py
habit/compat/engines/habitat_analysis/services/clustering_service.py
habit/compat/engines/habitat_analysis/services/feature_service.py
habit/compat/engines/habitat_analysis/services/habitat_image_writer.py
habit/compat/engines/habitat_analysis/services/result_publisher.py
habit/compat/engines/machine_learning/__init__.py
habit/compat/engines/machine_learning/config_schemas.py
habit/compat/engines/machine_learning/configurator.py
habit/compat/engines/machine_learning/data_manager.py
habit/compat/engines/machine_learning/pipeline_builder.py
habit/compat/engines/machine_learning/resampling.py
habit/compat/engines/machine_learning/run.py
habit/compat/engines/machine_learning/contracts/__init__.py
habit/compat/engines/machine_learning/contracts/dataset.py
habit/compat/engines/machine_learning/contracts/plan.py
habit/compat/engines/machine_learning/contracts/protocols.py
habit/compat/engines/machine_learning/contracts/results.py
habit/compat/engines/machine_learning/evaluation/__init__.py
habit/compat/engines/machine_learning/evaluation/calculations.py
habit/compat/engines/machine_learning/evaluation/explainability.py
habit/compat/engines/machine_learning/evaluation/metrics.py
habit/compat/engines/machine_learning/evaluation/model_evaluation.py
habit/compat/engines/machine_learning/evaluation/prediction_container.py
habit/compat/engines/machine_learning/evaluation/threshold_manager.py
habit/compat/engines/machine_learning/feature_selectors/__init__.py
habit/compat/engines/machine_learning/feature_selectors/_io.py
habit/compat/engines/machine_learning/feature_selectors/anova_selector.py
habit/compat/engines/machine_learning/feature_selectors/chi2_selector.py
habit/compat/engines/machine_learning/feature_selectors/correlation_selector.py
habit/compat/engines/machine_learning/feature_selectors/icc_selector.py
habit/compat/engines/machine_learning/feature_selectors/lasso_selector.py
habit/compat/engines/machine_learning/feature_selectors/mrmr_selector.py
habit/compat/engines/machine_learning/feature_selectors/python_stepwise_selector.py
habit/compat/engines/machine_learning/feature_selectors/rfecv_selector.py
habit/compat/engines/machine_learning/feature_selectors/selector_registry.py
habit/compat/engines/machine_learning/feature_selectors/statistical_test_selector.py
habit/compat/engines/machine_learning/feature_selectors/univariate_logistic_selector.py
habit/compat/engines/machine_learning/feature_selectors/variance_selector.py
habit/compat/engines/machine_learning/feature_selectors/vif_selector.py
habit/compat/engines/machine_learning/models/__init__.py
habit/compat/engines/machine_learning/models/adaboost_model.py
habit/compat/engines/machine_learning/models/autogluon_model.py
habit/compat/engines/machine_learning/models/base.py
habit/compat/engines/machine_learning/models/custom_model_example.py
habit/compat/engines/machine_learning/models/decision_tree_model.py
habit/compat/engines/machine_learning/models/ensemble.py
habit/compat/engines/machine_learning/models/factory.py
habit/compat/engines/machine_learning/models/gradient_boosting_model.py
habit/compat/engines/machine_learning/models/knn_model.py
habit/compat/engines/machine_learning/models/logistic_regression_model.py
habit/compat/engines/machine_learning/models/mlp_model.py
habit/compat/engines/machine_learning/models/naive_bayes_model.py
habit/compat/engines/machine_learning/models/random_forest_model.py
habit/compat/engines/machine_learning/models/svm_model.py
habit/compat/engines/machine_learning/models/utils.py
habit/compat/engines/machine_learning/models/xgboost_model.py
habit/compat/engines/machine_learning/reporting/__init__.py
habit/compat/engines/machine_learning/reporting/model_store.py
habit/compat/engines/machine_learning/reporting/plot_composer.py
habit/compat/engines/machine_learning/reporting/report_exporter.py
habit/compat/engines/machine_learning/reporting/report_writer.py
habit/compat/engines/machine_learning/runners/__init__.py
habit/compat/engines/machine_learning/runners/base.py
habit/compat/engines/machine_learning/runners/context.py
habit/compat/engines/machine_learning/runners/holdout.py
habit/compat/engines/machine_learning/runners/inference.py
habit/compat/engines/machine_learning/runners/kfold.py
habit/compat/engines/machine_learning/visualization/__init__.py
habit/compat/engines/machine_learning/visualization/km_survival.py
habit/compat/engines/machine_learning/visualization/plot_manager.py
habit/compat/engines/machine_learning/visualization/plotting.py
habit/compat/engines/machine_learning/workflows/__init__.py
habit/compat/engines/machine_learning/workflows/base.py
habit/compat/engines/machine_learning/workflows/comparison_workflow.py
habit/compat/engines/machine_learning/workflows/holdout_workflow.py
habit/compat/engines/machine_learning/workflows/kfold_workflow.py
habit/contracts/__init__.py
habit/contracts/geometry.py
habit/contracts/habitat.py
habit/contracts/image.py
habit/contracts/inspection.py
habit/contracts/manifest.py
habit/contracts/ops.py
habit/contracts/outcome.py
habit/contracts/provenance.py
habit/contracts/subject.py
habit/contracts/table.py
habit/datasets/__init__.py
habit/datasets/demo.py
habit/datasets/synthetic.py
habit/evaluation/__init__.py
habit/evaluation/_base.py
habit/evaluation/comparison.py
habit/evaluation/metrics.py
habit/evaluation/panel.py
habit/evaluation/registry.py
habit/evaluation/regression_metrics.py
habit/evaluation/regression_registry.py
habit/evaluation/reliability.py
habit/evaluation/split.py
habit/evaluation/statistics.py
habit/evaluation/survival_metrics.py
habit/evaluation/survival_registry.py
habit/evaluation/thresholds.py
habit/execution/__init__.py
habit/execution/backends.py
habit/execution/checkpoint.py
habit/execution/checkpoint_migrate.py
habit/execution/process_pool.py
habit/execution/selection.py
habit/feature_preprocessing/__init__.py
habit/feature_preprocessing/chains.py
habit/feature_preprocessing/methods.py
habit/feature_preprocessing/registry.py
habit/feature_selection/__init__.py
habit/feature_selection/_base.py
habit/feature_selection/registry.py
habit/feature_selection/selectors.py
habit/habitat_features/__init__.py
habit/habitat_features/_base.py
habit/habitat_features/compare.py
habit/habitat_features/each_habitat.py
habit/habitat_features/graph.py
habit/habitat_features/ith.py
habit/habitat_features/msi.py
habit/habitat_features/non_radiomics.py
habit/habitat_features/registry.py
habit/habitat_features/traditional.py
habit/habitat_features/volume.py
habit/habitat_features/whole_habitat.py
habit/habitat_model/__init__.py
habit/habitat_model/_base.py
habit/habitat_model/_selection.py
habit/habitat_model/gmm.py
habit/habitat_model/kmeans.py
habit/habitat_model/registry.py
habit/habitat_model/assignment/__init__.py
habit/habitat_model/assignment/nearest_centroid.py
habit/habitat_model/assignment/registry.py
habit/habitat_model/postprocess/__init__.py
habit/habitat_model/postprocess/connected_components.py
habit/image/__init__.py
habit/image_preprocessing/__init__.py
habit/image_preprocessing/_subject.py
habit/image_preprocessing/geometry.py
habit/image_preprocessing/methods.py
habit/image_preprocessing/registry.py
habit/inspection/__init__.py
habit/inspection/recorder.py
habit/kernels/__init__.py
habit/kernels/cluster_selection.py
habit/kernels/cluster_validation_metadata.py
habit/kernels/feature_transforms.py
habit/kernels/habitat_label_match.py
habit/kernels/habitat_metrics.py
habit/kernels/icc.py
habit/kernels/image_clahe.py
habit/kernels/image_histogram.py
habit/kernels/image_n4.py
habit/kernels/image_perturbation.py
habit/kernels/image_registration.py
habit/kernels/image_reorient.py
habit/kernels/image_resample.py
habit/kernels/image_zscore.py
habit/kernels/label_postprocess.py
habit/kernels/statistics.py
habit/kernels/voxel_icc.py
habit/kernels/voxel_texture.py
habit/kernels/habitat_graph/__init__.py
habit/kernels/habitat_graph/array_graph.py
habit/kernels/habitat_graph/brandes.py
habit/kernels/habitat_graph/csr.py
habit/kernels/habitat_graph/distance.py
habit/kernels/habitat_graph/edges.py
habit/kernels/habitat_graph/extended_metrics.py
habit/kernels/habitat_graph/features.py
habit/kernels/habitat_graph/metrics.py
habit/kernels/habitat_graph/models.py
habit/kernels/habitat_graph/nodes.py
habit/kernels/habitat_graph/null_ensemble.py
habit/kernels/habitat_graph/null_models.py
habit/kernels/habitat_graph/proximity.py
habit/kernels/habitat_graph/traversal.py
habit/kernels/habitat_graph/union_find.py
habit/kernels/radiomics/__init__.py
habit/kernels/radiomics/cpu_formulas.py
habit/kernels/radiomics/native_batch.py
habit/kernels/radiomics/settings.py
habit/kernels/radiomics/supervoxel_batch.py
habit/kernels/radiomics/voxel_maps.py
habit/kernels/radiomics/cext/__init__.py
habit/kernels/radiomics/cext/_fallback.py
habit/kernels/radiomics/cext/torch_batch.py
habit/kernels/radiomics/cext/src/_sv_cmatrices.c
habit/kernels/radiomics/cext/src/sv_cmatrices.c
habit/kernels/radiomics/cext/src/sv_cmatrices.h
habit/kernels/radiomics/gpumatrices/__init__.py
habit/kernels/radiomics/gpumatrices/_geom.py
habit/kernels/radiomics/gpumatrices/angles.py
habit/kernels/radiomics/gpumatrices/glcm.py
habit/kernels/radiomics/gpumatrices/gldm.py
habit/kernels/radiomics/gpumatrices/glrlm.py
habit/kernels/radiomics/gpumatrices/glszm.py
habit/kernels/radiomics/gpumatrices/ngtdm.py
habit/kernels/radiomics/torchradiomics/LICENSE
habit/kernels/radiomics/torchradiomics/TorchRadiomicsBase.py
habit/kernels/radiomics/torchradiomics/TorchRadiomicsFirstOrder.py
habit/kernels/radiomics/torchradiomics/TorchRadiomicsGLCM.py
habit/kernels/radiomics/torchradiomics/TorchRadiomicsGLDM.py
habit/kernels/radiomics/torchradiomics/TorchRadiomicsGLRLM.py
habit/kernels/radiomics/torchradiomics/TorchRadiomicsGLSZM.py
habit/kernels/radiomics/torchradiomics/TorchRadiomicsNGTDM.py
habit/kernels/radiomics/torchradiomics/__init__.py
habit/pipeline/__init__.py
habit/pipeline/assembly.py
habit/pipeline/outcome_access.py
habit/pipeline/pooling.py
habit/pipeline/sklearn_interop.py
habit/pipeline/pooling_marker/__init__.py
habit/pipeline/pooling_marker/pool.py
habit/pipeline/pooling_marker/registry.py
habit/pipeline/stages/__init__.py
habit/pipeline/stages/executor.py
habit/pipeline/stages/resolve.py
habit/plugins/__init__.py
habit/precision/__init__.py
habit/precision/analysis.py
habit/precision/atoms.py
habit/precision/chain.py
habit/precision/perturbations.py
habit/precision/precise_set.py
habit/precision/registry.py
habit/precision/stability.py
habit/radiomics/__init__.py
habit/radiomics/_domain.py
habit/recipes/__init__.py
habit/recipes/auxiliary.py
habit/recipes/comparison.py
habit/recipes/comparison_reporting.py
habit/recipes/features.py
habit/recipes/habitat.py
habit/recipes/icc.py
habit/recipes/icc_runner.py
habit/recipes/ml_reporting.py
habit/recipes/modeling.py
habit/recipes/precision.py
habit/recipes/preprocess.py
habit/recipes/radiomics.py
habit/recipes/result.py
habit/recipes/sort_dicom.py
habit/recipes/study.py
habit/recipes/yaml_runner.py
habit/registry/__init__.py
habit/registry/base.py
habit/registry/core.py
habit/regression/__init__.py
habit/regression/_base.py
habit/regression/models.py
habit/regression/registry.py
habit/report/__init__.py
habit/report/api.py
habit/report/figures.py
habit/resources/__init__.py
habit/resources/demo_config/README_CONFIG.md
habit/resources/demo_config/__init__.py
habit/resources/demo_config/auxiliary/config_icc_analysis.yaml
habit/resources/demo_config/auxiliary/config_icc_demo.yaml
habit/resources/demo_config/auxiliary/config_icc_minimal.yaml
habit/resources/demo_config/dicom_sort/config_sort_dicom.yaml
habit/resources/demo_config/feature_extraction/config_extract_features.yaml
habit/resources/demo_config/feature_extraction/config_extract_features_demo.yaml
habit/resources/demo_config/feature_extraction/config_extract_features_minimal.yaml
habit/resources/demo_config/habitat/config_habitat_direct_pooling.yaml
habit/resources/demo_config/habitat/config_habitat_direct_pooling_gmm_aic.yaml
habit/resources/demo_config/habitat/config_habitat_direct_pooling_predict.yaml
habit/resources/demo_config/habitat/config_habitat_msd_demo.yaml
habit/resources/demo_config/habitat/config_habitat_one_step_elbow_train.yaml
habit/resources/demo_config/habitat/config_habitat_one_step_gmm_bic.yaml
habit/resources/demo_config/habitat/config_habitat_one_step_raw_concat_predict.yaml
habit/resources/demo_config/habitat/config_habitat_one_step_raw_concat_train.yaml
habit/resources/demo_config/habitat/config_habitat_one_step_silhouette_train.yaml
habit/resources/demo_config/habitat/config_habitat_one_step_voxel_radiomics_predict.yaml
habit/resources/demo_config/habitat/config_habitat_one_step_voxel_radiomics_train.yaml
habit/resources/demo_config/habitat/config_habitat_pooling_voxel_radiomics_predict.yaml
habit/resources/demo_config/habitat/config_habitat_pooling_voxel_radiomics_train.yaml
habit/resources/demo_config/habitat/config_habitat_two_step.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_cli_demo.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_fixed_n_train.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_gmm_bic.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_kmeans_silhouette.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_minimal.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_predict.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_supervoxel_gmm_train.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_supervoxel_radiomics_predict.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_supervoxel_radiomics_train.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_supervoxel_slic.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_v1.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_voxel_radiomics_predict.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_voxel_radiomics_train.yaml
habit/resources/demo_config/habitat/config_habitat_two_step_wsl.yaml
habit/resources/demo_config/habitat/file_habitat.yaml
habit/resources/demo_config/habitat/file_habitat_demo.yaml
habit/resources/demo_config/habitat/file_habitat_registered_single_roi.yaml
habit/resources/demo_config/machine_learning/config_machine_learning.yaml
habit/resources/demo_config/machine_learning/config_machine_learning_clinical.yaml
habit/resources/demo_config/machine_learning/config_machine_learning_clinical_smote.yaml
habit/resources/demo_config/machine_learning/config_machine_learning_clinical_stratified.yaml
habit/resources/demo_config/machine_learning/config_machine_learning_kfold.yaml
habit/resources/demo_config/machine_learning/config_machine_learning_kfold_demo.yaml
habit/resources/demo_config/machine_learning/config_machine_learning_kfold_minimal.yaml
habit/resources/demo_config/machine_learning/config_machine_learning_multi_tables_demo.yaml
habit/resources/demo_config/machine_learning/config_machine_learning_predict.yaml
habit/resources/demo_config/machine_learning/config_machine_learning_radiomics.yaml
habit/resources/demo_config/machine_learning/config_machine_learning_radiomics_icc_demo.yaml
habit/resources/demo_config/machine_learning/config_machine_learning_radiomics_minimal.yaml
habit/resources/demo_config/machine_learning/config_machine_learning_radiomics_variance_only.yaml
habit/resources/demo_config/machine_learning/config_machine_learning_steps_v1.yaml
habit/resources/demo_config/model_comparison/config_model_comparison.yaml
habit/resources/demo_config/model_comparison/config_model_comparison_demo.yaml
habit/resources/demo_config/model_comparison/config_model_comparison_minimal.yaml
habit/resources/demo_config/model_comparison/config_model_comparison_single_radiomics.yaml
habit/resources/demo_config/preprocessing/config_image_preprocessing.yaml
habit/resources/demo_config/preprocessing/config_image_preprocessing_dcm2nii.yaml
habit/resources/demo_config/preprocessing/config_preprocessing_dcm2nii_demo.yaml
habit/resources/demo_config/preprocessing/config_preprocessing_demo.yaml
habit/resources/demo_config/preprocessing/config_preprocessing_demo_elastix.yaml
habit/resources/demo_config/preprocessing/config_preprocessing_demo_wsl.yaml
habit/resources/demo_config/preprocessing/config_preprocessing_minimal.yaml
habit/resources/demo_config/preprocessing/config_preprocessing_n4_reg_resample_zscore.yaml
habit/resources/demo_config/preprocessing/config_preprocessing_n4_resample_registration.yaml
habit/resources/demo_config/preprocessing/config_preprocessing_resample_only.yaml
habit/resources/demo_config/preprocessing/files_preprocessing.yaml
habit/resources/demo_config/preprocessing/files_preprocessing_dcm2nii_demo.yaml
habit/resources/demo_config/preprocessing/files_preprocessing_demo.yaml
habit/resources/demo_config/preprocessing/image_files.yaml
habit/resources/demo_config/radiomics/config_traditional_radiomics.yaml
habit/resources/demo_config/radiomics/config_traditional_radiomics_minimal.yaml
habit/resources/demo_config/radiomics/parameter.yaml
habit/resources/demo_config/radiomics/parameter_basic.yaml
habit/resources/demo_config/radiomics/parameter_habitat.yaml
habit/resources/demo_config/radiomics/parameter_with_filters.yaml
habit/resources/demo_config/radiomics/params_supervoxel_radiomics.yaml
habit/resources/demo_config/radiomics/params_voxel_radiomics.yaml
habit/resources/radiomics/__init__.py
habit/resources/radiomics/parameter.yaml
habit/resources/radiomics/parameter_habitat.yaml
habit/resources/radiomics/params_supervoxel_radiomics.yaml
habit/resources/radiomics/params_voxel_radiomics.yaml
habit/schemas/__init__.py
habit/schemas/base.py
habit/schemas/field_reflect.py
habit/schemas/reflect.py
habit/schemas/registry.py
habit/schemas/validation.py
habit/schemas/steps/__init__.py
habit/schemas/steps/feature_selection.py
habit/schemas/steps/ml_models.py
habit/schemas/steps/preprocessing.py
habit/schemas/workflows/__init__.py
habit/schemas/workflows/dicom_sort.py
habit/schemas/workflows/habitat.py
habit/schemas/workflows/icc.py
habit/schemas/workflows/ml.py
habit/schemas/workflows/preprocessing.py
habit/spec/__init__.py
habit/spec/document.py
habit/spec/expressions.py
habit/spec/legacy.py
habit/spec/policy.py
habit/spec/specs.py
habit/spec/stages.py
habit/spec/yaml_io.py
habit/supervoxel/__init__.py
habit/supervoxel/_base.py
habit/supervoxel/feature_clustering.py
habit/supervoxel/features_base.py
habit/supervoxel/features_registry.py
habit/supervoxel/mean.py
habit/supervoxel/radiomics.py
habit/supervoxel/registry.py
habit/supervoxel/slic.py
habit/supervoxel/statistics.py
habit/survival/__init__.py
habit/survival/_base.py
habit/survival/models.py
habit/survival/registry.py
habit/table_preprocessing/__init__.py
habit/table_preprocessing/_base.py
habit/table_preprocessing/methods.py
habit/table_preprocessing/registry.py
habit/utils/__init__.py
habit/utils/browser_utils.py
habit/utils/config_loader.py
habit/utils/demo_config_utils.py
habit/utils/deprecation.py
habit/utils/dice_calculator.py
habit/utils/dicom_preprocess_path_utils.py
habit/utils/dicom_utils.py
habit/utils/docker_path_utils.py
habit/utils/estimator_utils.py
habit/utils/feature_selection_utils.py
habit/utils/file_system_utils.py
habit/utils/font_config.py
habit/utils/gradio_patches.py
habit/utils/habitat_postprocess_utils.py
habit/utils/habitats_results_io.py
habit/utils/image_converter.py
habit/utils/import_utils.py
habit/utils/io_utils.py
habit/utils/isolated_runner.py
habit/utils/job_cancel.py
habit/utils/lazy_exports.py
habit/utils/log_utils.py
habit/utils/logging_usage_examples.py
habit/utils/optional_deps.py
habit/utils/parallel_gpu_utils.py
habit/utils/parallel_utils.py
habit/utils/persistent_worker_entry.py
habit/utils/persistent_worker_protocol.py
habit/utils/persistent_worker_runner.py
habit/utils/progress_utils.py
habit/utils/project_urls.py
habit/utils/radiomics_params_utils.py
habit/utils/radiomics_preset_utils.py
habit/utils/random_utils.py
habit/utils/sitk_geometry_diagnostics.py
habit/utils/subprocess_utils.py
habit/utils/torch_radiomics_utils.py
habit/utils/visualization.py
habit/utils/visualization_utils.py
habit/utils/voxel_batch_utils.py
habit/utils/write_access.py
habit/utils/yaml_utils.py
habit/viz/__init__.py
habit/viz/classification.py
habit/viz/colorbar.py
habit/viz/habitat_clustering.py
habit/viz/habitat_core.py
habit/viz/habitat_features.py
habit/viz/habitat_graph.py
habit/viz/habitat_napari.py
habit/viz/habitat_overlay.py
habit/viz/intensity.py
habit/viz/km_survival_plotter.py
habit/viz/labels.py
habit/viz/orientation.py
habit/viz/palette.py
habit/viz/regression.py
habit/viz/style.py
habit/viz/survival.py
habit/viz/voxel_texture.py
habit/voxel_features/__init__.py
habit/voxel_features/_base.py
habit/voxel_features/cache.py
habit/voxel_features/concat.py
habit/voxel_features/expression.py
habit/voxel_features/extract.py
habit/voxel_features/kinetic.py
habit/voxel_features/local_entropy.py
habit/voxel_features/raw.py
habit/voxel_features/registry.py
habit/voxel_features/voxel_radiomics.py
habitat_analysis.egg-info/PKG-INFO
habitat_analysis.egg-info/SOURCES.txt
habitat_analysis.egg-info/dependency_links.txt
habitat_analysis.egg-info/entry_points.txt
habitat_analysis.egg-info/requires.txt
habitat_analysis.egg-info/top_level.txt
scripts/sync_demo_config.py