.flake8
.gitignore
CODE_OF_CONDUCT.md
LICENSE
README.md
pyproject.toml
setup.py
.codeocean/datasets.json
.codeocean/resources.json
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/user-story.md
.github/workflows/init.yml
.github/workflows/tag_and_publish.yml
.github/workflows/test_and_lint.yml
docs/Makefile
docs/make.bat
docs/source/conf.py
docs/source/index.rst
docs/source/_static/dark-logo.svg
docs/source/_static/favicon.ico
docs/source/_static/light-logo.svg
environment/Dockerfile
metadata/metadata.yml
notebook/README.md
notebook/attractor_toy_model.ipynb
notebook/average_psth.ipynb
notebook/behavior_qc.ipynb
notebook/behavior_qc_example.ipynb
notebook/behavior_qc_filter.ipynb
notebook/behavior_qc_filter_ephys_sessions_check.ipynb
notebook/calculate_auc.ipynb
notebook/check_monotomic_and_response_pattern.ipynb
notebook/compare_to_threshold_model copy 13.ipynb
notebook/compare_to_threshold_model.ipynb
notebook/correlation_compare_different_units_window.ipynb
notebook/correlation_running.ipynb
notebook/correlation_visualization.ipynb
notebook/ephys_dimension_reduction_CD.ipynb
notebook/ephys_dimension_reduction_dPCA.ipynb
notebook/ephys_dimension_reduction_tdr.ipynb
notebook/ephys_playground.ipynb
notebook/ephys_playground_2.ipynb
notebook/ephys_while_stimulation.ipynb
notebook/eplore3.ipynb
notebook/example_for_ulises_ALM_MD.ipynb
notebook/example_for_ulises_VP_MD.ipynb
notebook/example_for_ulises_mPFC_ALM_VPMDStimulation.ipynb
notebook/example_for_ulises_mPFC_MD.ipynb
notebook/explore1.ipynb
notebook/explore2.ipynb
notebook/extract_psth_latent.ipynb
notebook/get_units_metadata.ipynb
notebook/long_time_scale_correlation.ipynb
notebook/model_camparison.ipynb
notebook/noise_correlation.ipynb
notebook/optogenetics.ipynb
notebook/plot_raster copy.ipynb
notebook/plot_raster.ipynb
notebook/plot_raster_sactter_copy.ipynb
notebook/psth_playground.ipynb
notebook/reward_rate.ipynb
notebook/reward_rate_ephys_encoding.ipynb
notebook/run_behavior_summary.ipynb
notebook/tmp.ipynb
notebook/tutorial.ipynb
src/aind_dft_ephys_analysis/__init__.py
src/aind_dft_ephys_analysis/average_psth.py
src/aind_dft_ephys_analysis/behavior_qc.py
src/aind_dft_ephys_analysis/behavior_qc_metrics_summary.py
src/aind_dft_ephys_analysis/behavior_qc_visualization.py
src/aind_dft_ephys_analysis/behavior_qc_visualization.py.save
src/aind_dft_ephys_analysis/behavior_utils.py
src/aind_dft_ephys_analysis/calculate_auc.py
src/aind_dft_ephys_analysis/calculate_auc_visualization.py
src/aind_dft_ephys_analysis/check_monotonic.py
src/aind_dft_ephys_analysis/correlation_utils.py
src/aind_dft_ephys_analysis/create_psth.py
src/aind_dft_ephys_analysis/ctt_worker.py
src/aind_dft_ephys_analysis/dataframe_relationship_tree
src/aind_dft_ephys_analysis/ephys_behavior.py
src/aind_dft_ephys_analysis/ephys_behavior_visualization.py
src/aind_dft_ephys_analysis/ephys_dimension_reduction_CD.py
src/aind_dft_ephys_analysis/ephys_dimension_reduction_CD_visualization.py
src/aind_dft_ephys_analysis/ephys_dimension_reduction_dPCA.py
src/aind_dft_ephys_analysis/ephys_dimension_reduction_tdr.py
src/aind_dft_ephys_analysis/ephys_utils.py
src/aind_dft_ephys_analysis/error_sessions.txt
src/aind_dft_ephys_analysis/extract_psth_latent.py
src/aind_dft_ephys_analysis/force_pipeline.py
src/aind_dft_ephys_analysis/general_utils.py
src/aind_dft_ephys_analysis/general_visualization.py
src/aind_dft_ephys_analysis/model_fitting.py
src/aind_dft_ephys_analysis/monotonic_mp.py
src/aind_dft_ephys_analysis/monotonic_visualization.py
src/aind_dft_ephys_analysis/nwb_utils.py
src/aind_dft_ephys_analysis/optogenetics_utils.py
src/aind_dft_ephys_analysis/optogenetics_visualization.py
src/aind_dft_ephys_analysis/plot_quantile.py
src/aind_dft_ephys_analysis/plot_raster.py
src/aind_dft_ephys_analysis/raster_worker.py
src/aind_dft_ephys_analysis/reward_rate_visualization.py
src/aind_dft_ephys_analysis/run_ctt_grid_mp.py
src/aind_dft_ephys_analysis/scatter_activity_latent_worker.py
src/aind_dft_ephys_analysis.egg-info/PKG-INFO
src/aind_dft_ephys_analysis.egg-info/SOURCES.txt
src/aind_dft_ephys_analysis.egg-info/dependency_links.txt
src/aind_dft_ephys_analysis.egg-info/requires.txt
src/aind_dft_ephys_analysis.egg-info/top_level.txt
tests/__init__.py
tests/test_example.py