README.md
pyproject.toml
src/origami/blast.py
src/origami/circos_tools.py
src/origami/circularize.py
src/origami/cli.py
src/origami/config.py
src/origami/dot.py
src/origami/genome_stat.py
src/origami/hits.py
src/origami/io.py
src/origami/linear.py
src/origami/logging_setup.py
src/origami/main.py
src/origami/models.py
src/origami/pairing.py
src/origami/paths.py
src/origami/report.py
src/origami/rotate.py
src/origami/setup.py
src/origami/trim.py
src/origami/utils.py
src/origami/workflows.py
src/origami/data/__init__.py
src/origami/data/clustered_DB/OriC_clustered100_DB.nhr
src/origami/data/clustered_DB/OriC_clustered100_DB.nin
src/origami/data/clustered_DB/OriC_clustered100_DB.nsq
src/origami/data/clustered_DB/OriC_clustered_100.fasta
src/origami/data/clustered_DB/__init__.py
src/origami/data/clustered_DB/dnaA_clustered100_DB.nhr
src/origami/data/clustered_DB/dnaA_clustered100_DB.nin
src/origami/data/clustered_DB/dnaA_clustered100_DB.nsq
src/origami/data/clustered_DB/dnaA_clustered_100_modified_headers.fasta
src/origenomi.egg-info/PKG-INFO
src/origenomi.egg-info/SOURCES.txt
src/origenomi.egg-info/dependency_links.txt
src/origenomi.egg-info/entry_points.txt
src/origenomi.egg-info/requires.txt
src/origenomi.egg-info/top_level.txt