LICENSE
README.md
pyproject.toml
evoseq/__init__.py
evoseq/cli.py
evoseq/config.py
evoseq/paths.py
evoseq.egg-info/PKG-INFO
evoseq.egg-info/SOURCES.txt
evoseq.egg-info/dependency_links.txt
evoseq.egg-info/entry_points.txt
evoseq.egg-info/requires.txt
evoseq.egg-info/top_level.txt
evoseq/preprocess/__init__.py
evoseq/preprocess/discovery.py
evoseq/preprocess/export.py
evoseq/preprocess/fasta.py
evoseq/preprocess/manifest.py
evoseq/preprocess/pipeline.py
evoseq/preprocess/validation.py
evoseq/preprocess/variant.py
evoseq/scoring/__init__.py
evoseq/scoring/environment.py
evoseq/scoring/evo2_model.py
evoseq/scoring/export.py
evoseq/scoring/perbase.py
evoseq/scoring/pipeline.py
tests/test_preprocess_and_score.py