| gamdpy/__init__.py |
(no class) |
34 |
0 |
0 |
100% |
| gamdpy/calculators/__init__.py |
(no class) |
5 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_hydrodynamic_correlations.py |
CalculatorHydrodynamicCorrelations |
43 |
2 |
0 |
95% |
| gamdpy/calculators/calculator_hydrodynamic_correlations.py |
(no class) |
31 |
18 |
0 |
42% |
| gamdpy/calculators/calculator_hydrodynamic_profile.py |
CalculatorHydrodynamicProfile |
40 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_hydrodynamic_profile.py |
(no class) |
15 |
6 |
0 |
60% |
| gamdpy/calculators/calculator_radial_distribution.py |
CalculatorRadialDistribution |
83 |
21 |
0 |
75% |
| gamdpy/calculators/calculator_radial_distribution.py |
(no class) |
11 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_structure_factor.py |
CalculatorStructureFactor |
127 |
34 |
0 |
73% |
| gamdpy/calculators/calculator_structure_factor.py |
(no class) |
15 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_widom_insertion.py |
CalculatorWidomInsertion |
82 |
35 |
0 |
57% |
| gamdpy/calculators/calculator_widom_insertion.py |
(no class) |
12 |
0 |
0 |
100% |
| gamdpy/cc_cores_per_SM_dict.py |
(no class) |
1 |
0 |
0 |
100% |
| gamdpy/configuration/Configuration.py |
Configuration |
221 |
41 |
0 |
81% |
| gamdpy/configuration/Configuration.py |
(no class) |
139 |
32 |
0 |
77% |
| gamdpy/configuration/__init__.py |
(no class) |
1 |
0 |
0 |
100% |
| gamdpy/configuration/colarray.py |
colarray |
27 |
1 |
0 |
96% |
| gamdpy/configuration/colarray.py |
(no class) |
10 |
0 |
0 |
100% |
| gamdpy/configuration/make_lattice.py |
(no class) |
26 |
1 |
0 |
96% |
| gamdpy/configuration/old_input_output.py |
(no class) |
150 |
12 |
0 |
92% |
| gamdpy/configuration/topology.py |
Topology |
16 |
0 |
0 |
100% |
| gamdpy/configuration/topology.py |
(no class) |
107 |
24 |
0 |
78% |
| gamdpy/configuration/unit_cells.py |
(no class) |
3 |
0 |
0 |
100% |
| gamdpy/integrators/NPT_Atomic.py |
NPT_Atomic |
47 |
2 |
100 |
96% |
| gamdpy/integrators/NPT_Atomic.py |
(no class) |
10 |
0 |
0 |
100% |
| gamdpy/integrators/NPT_Langevin.py |
NPT_Langevin |
142 |
86 |
0 |
39% |
| gamdpy/integrators/NPT_Langevin.py |
(no class) |
12 |
0 |
0 |
100% |
| gamdpy/integrators/NVE.py |
NVE |
53 |
32 |
0 |
40% |
| gamdpy/integrators/NVE.py |
(no class) |
9 |
0 |
0 |
100% |
| gamdpy/integrators/NVT.py |
NVT |
80 |
42 |
0 |
48% |
| gamdpy/integrators/NVT.py |
(no class) |
9 |
0 |
0 |
100% |
| gamdpy/integrators/NVT_Langevin.py |
NVT_Langevin |
68 |
37 |
0 |
46% |
| gamdpy/integrators/NVT_Langevin.py |
(no class) |
12 |
0 |
0 |
100% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT |
665 |
665 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
(no class) |
58 |
36 |
0 |
38% |
| gamdpy/integrators/SLLOD.py |
SLLOD |
35 |
1 |
176 |
97% |
| gamdpy/integrators/SLLOD.py |
(no class) |
10 |
0 |
0 |
100% |
| gamdpy/integrators/__init__.py |
(no class) |
8 |
0 |
0 |
100% |
| gamdpy/integrators/integrator.py |
Integrator |
2 |
2 |
0 |
0% |
| gamdpy/integrators/integrator.py |
(no class) |
7 |
0 |
0 |
100% |
| gamdpy/interactions/__init__.py |
(no class) |
13 |
0 |
0 |
100% |
| gamdpy/interactions/angles.py |
Angles |
100 |
53 |
0 |
47% |
| gamdpy/interactions/angles.py |
(no class) |
26 |
4 |
0 |
85% |
| gamdpy/interactions/bonds.py |
Bonds |
90 |
38 |
0 |
58% |
| gamdpy/interactions/bonds.py |
(no class) |
12 |
0 |
0 |
100% |
| gamdpy/interactions/dihedrals.py |
Dihedrals |
126 |
52 |
0 |
59% |
| gamdpy/interactions/dihedrals.py |
(no class) |
27 |
0 |
0 |
100% |
| gamdpy/interactions/gravity.py |
Gravity |
40 |
14 |
0 |
65% |
| gamdpy/interactions/gravity.py |
(no class) |
13 |
0 |
0 |
100% |
| gamdpy/interactions/interaction.py |
Interaction |
3 |
2 |
0 |
33% |
| gamdpy/interactions/interaction.py |
(no class) |
118 |
66 |
0 |
44% |
| gamdpy/interactions/make_fixed_interactions.py |
(no class) |
27 |
15 |
0 |
44% |
| gamdpy/interactions/nblist.py |
NbList2 |
99 |
55 |
0 |
44% |
| gamdpy/interactions/nblist.py |
(no class) |
8 |
0 |
0 |
100% |
| gamdpy/interactions/nblist_linked_lists.py |
NbListLinkedLists |
52 |
1 |
126 |
98% |
| gamdpy/interactions/nblist_linked_lists.py |
(no class) |
9 |
0 |
0 |
100% |
| gamdpy/interactions/pair_potential.py |
PairPotential |
189 |
106 |
0 |
44% |
| gamdpy/interactions/pair_potential.py |
(no class) |
15 |
0 |
0 |
100% |
| gamdpy/interactions/planar.py |
Planar |
39 |
17 |
0 |
56% |
| gamdpy/interactions/planar.py |
(no class) |
11 |
0 |
0 |
100% |
| gamdpy/interactions/planar_interactions.py |
(no class) |
40 |
0 |
24 |
100% |
| gamdpy/interactions/potential_functions/LJ_12_6.py |
(no class) |
9 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/LJ_12_6_sigma_epsilon.py |
(no class) |
13 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/SAAP.py |
(no class) |
28 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/__init__.py |
(no class) |
14 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/add_potential_functions.py |
(no class) |
6 |
0 |
4 |
100% |
| gamdpy/interactions/potential_functions/apply_shifted_force_cutoff.py |
(no class) |
4 |
0 |
9 |
100% |
| gamdpy/interactions/potential_functions/apply_shifted_potential_cutoff.py |
(no class) |
7 |
0 |
7 |
100% |
| gamdpy/interactions/potential_functions/cos_angle_function.py |
(no class) |
12 |
7 |
0 |
42% |
| gamdpy/interactions/potential_functions/harmonic_bond_function.py |
(no class) |
11 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/harmonic_repulsion.py |
(no class) |
12 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/hertzian.py |
(no class) |
13 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/make_IPL_n.py |
(no class) |
6 |
0 |
11 |
100% |
| gamdpy/interactions/potential_functions/make_LJ_m_n.py |
(no class) |
6 |
0 |
13 |
100% |
| gamdpy/interactions/potential_functions/make_potential_function_from_sympy.py |
(no class) |
15 |
0 |
5 |
100% |
| gamdpy/interactions/potential_functions/ryckbell_dihedral.py |
(no class) |
12 |
7 |
0 |
42% |
| gamdpy/interactions/relaxtemp.py |
Relaxtemp |
48 |
22 |
0 |
54% |
| gamdpy/interactions/relaxtemp.py |
(no class) |
13 |
0 |
0 |
100% |
| gamdpy/interactions/tether.py |
Tether |
51 |
12 |
0 |
76% |
| gamdpy/interactions/tether.py |
(no class) |
12 |
0 |
0 |
100% |
| gamdpy/misc/__init__.py |
(no class) |
0 |
0 |
0 |
100% |
| gamdpy/misc/extract_scalars.py |
(no class) |
13 |
3 |
0 |
77% |
| gamdpy/misc/make_function.py |
(no class) |
25 |
11 |
0 |
56% |
| gamdpy/misc/plot_molecule.py |
(no class) |
26 |
4 |
0 |
85% |
| gamdpy/misc/plot_scalars.py |
(no class) |
94 |
51 |
0 |
46% |
| gamdpy/misc/select_gpu.py |
(no class) |
12 |
3 |
0 |
75% |
| gamdpy/runtime_actions/__init__.py |
(no class) |
6 |
0 |
0 |
100% |
| gamdpy/runtime_actions/momentum_reset.py |
MomentumReset |
64 |
28 |
0 |
56% |
| gamdpy/runtime_actions/momentum_reset.py |
(no class) |
12 |
0 |
0 |
100% |
| gamdpy/runtime_actions/restart_saver.py |
RestartSaver |
27 |
11 |
0 |
59% |
| gamdpy/runtime_actions/restart_saver.py |
(no class) |
14 |
0 |
0 |
100% |
| gamdpy/runtime_actions/runtime_action.py |
RuntimeAction |
7 |
4 |
0 |
43% |
| gamdpy/runtime_actions/runtime_action.py |
(no class) |
52 |
8 |
0 |
85% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver |
133 |
59 |
0 |
56% |
| gamdpy/runtime_actions/scalar_saver.py |
(no class) |
20 |
0 |
0 |
100% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver |
93 |
36 |
0 |
61% |
| gamdpy/runtime_actions/stress_saver.py |
(no class) |
22 |
0 |
0 |
100% |
| gamdpy/runtime_actions/trajectory_saver.py |
TrajectorySaver |
97 |
37 |
0 |
62% |
| gamdpy/runtime_actions/trajectory_saver.py |
(no class) |
13 |
0 |
0 |
100% |
| gamdpy/simulation/Simulation.py |
Simulation |
465 |
296 |
0 |
36% |
| gamdpy/simulation/Simulation.py |
(no class) |
30 |
0 |
0 |
100% |
| gamdpy/simulation/__init__.py |
(no class) |
0 |
0 |
0 |
100% |
| gamdpy/simulation/get_default_compute_flags.py |
(no class) |
3 |
0 |
0 |
100% |
| gamdpy/simulation/get_default_compute_plan.py |
(no class) |
49 |
5 |
0 |
90% |
| gamdpy/simulation/get_default_sim.py |
(no class) |
14 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/__init__.py |
(no class) |
2 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards |
121 |
18 |
0 |
85% |
| gamdpy/simulation_boxes/lees_edwards.py |
(no class) |
21 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic |
62 |
1 |
0 |
98% |
| gamdpy/simulation_boxes/orthorhombic.py |
(no class) |
19 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox |
13 |
13 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
(no class) |
27 |
0 |
0 |
100% |
| gamdpy/tools/ConfigurationIO.py |
ConfigurationIO |
9 |
9 |
0 |
0% |
| gamdpy/tools/ConfigurationIO.py |
(no class) |
15 |
0 |
0 |
100% |
| gamdpy/tools/Evaluator.py |
Evaluator |
30 |
7 |
0 |
77% |
| gamdpy/tools/Evaluator.py |
(no class) |
10 |
0 |
0 |
100% |
| gamdpy/tools/TrajectoryIO.py |
TrajectoryIO |
124 |
29 |
0 |
77% |
| gamdpy/tools/TrajectoryIO.py |
(no class) |
11 |
0 |
0 |
100% |
| gamdpy/tools/__init__.py |
(no class) |
5 |
0 |
0 |
100% |
| gamdpy/tools/calc_dynamics.py |
(no class) |
96 |
44 |
0 |
54% |
| gamdpy/tools/print_h5.py |
(no class) |
20 |
1 |
0 |
95% |
| gamdpy/tools/save_configuration.py |
(no class) |
7 |
1 |
0 |
86% |
| gamdpy/visualization/__init__.py |
(no class) |
1 |
0 |
0 |
100% |
| gamdpy/visualization/k3d_.py |
k3d_Visualization |
40 |
40 |
0 |
0% |
| gamdpy/visualization/k3d_.py |
(no class) |
8 |
0 |
0 |
100% |