| gamdpy/__init__.py |
(no function) |
34 |
0 |
0 |
100% |
| gamdpy/calculators/__init__.py |
(no function) |
5 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_hydrodynamic_correlations.py |
__store__ |
13 |
13 |
0 |
0% |
| gamdpy/calculators/calculator_hydrodynamic_correlations.py |
__calccorr__ |
5 |
5 |
0 |
0% |
| gamdpy/calculators/calculator_hydrodynamic_correlations.py |
CalculatorHydrodynamicCorrelations.__init__ |
16 |
1 |
0 |
94% |
| gamdpy/calculators/calculator_hydrodynamic_correlations.py |
CalculatorHydrodynamicCorrelations.update |
6 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_hydrodynamic_correlations.py |
CalculatorHydrodynamicCorrelations.read |
21 |
1 |
0 |
95% |
| gamdpy/calculators/calculator_hydrodynamic_correlations.py |
(no function) |
13 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_hydrodynamic_profile.py |
__dosample__ |
6 |
6 |
0 |
0% |
| gamdpy/calculators/calculator_hydrodynamic_profile.py |
CalculatorHydrodynamicProfile.__init__ |
21 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_hydrodynamic_profile.py |
CalculatorHydrodynamicProfile.update |
2 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_hydrodynamic_profile.py |
CalculatorHydrodynamicProfile.read |
17 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_hydrodynamic_profile.py |
(no function) |
9 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_radial_distribution.py |
CalculatorRadialDistribution.__init__ |
13 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_radial_distribution.py |
CalculatorRadialDistribution.make_updater_kernel |
8 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_radial_distribution.py |
CalculatorRadialDistribution.make_updater_kernel.rdf_calculator_full |
21 |
21 |
0 |
0% |
| gamdpy/calculators/calculator_radial_distribution.py |
CalculatorRadialDistribution.update |
4 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_radial_distribution.py |
CalculatorRadialDistribution.read |
27 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_radial_distribution.py |
CalculatorRadialDistribution.save_average |
10 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_radial_distribution.py |
(no function) |
11 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_structure_factor.py |
CalculatorStructureFactor.__init__ |
26 |
2 |
0 |
92% |
| gamdpy/calculators/calculator_structure_factor.py |
CalculatorStructureFactor.generate_q_vectors |
12 |
1 |
0 |
92% |
| gamdpy/calculators/calculator_structure_factor.py |
CalculatorStructureFactor._make_update_kernel |
5 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_structure_factor.py |
CalculatorStructureFactor._make_update_kernel.kernel |
18 |
18 |
0 |
0% |
| gamdpy/calculators/calculator_structure_factor.py |
CalculatorStructureFactor._compute_rho_q_gpu |
19 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_structure_factor.py |
CalculatorStructureFactor._generate_compute_rho_q |
10 |
4 |
0 |
60% |
| gamdpy/calculators/calculator_structure_factor.py |
CalculatorStructureFactor._generate_compute_rho_q.func |
7 |
7 |
0 |
0% |
| gamdpy/calculators/calculator_structure_factor.py |
CalculatorStructureFactor.update |
7 |
1 |
0 |
86% |
| gamdpy/calculators/calculator_structure_factor.py |
CalculatorStructureFactor.read |
20 |
1 |
0 |
95% |
| gamdpy/calculators/calculator_structure_factor.py |
CalculatorStructureFactor.save_average |
3 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_structure_factor.py |
(no function) |
15 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_widom_insertion.py |
CalculatorWidomInsertion.__init__ |
23 |
3 |
0 |
87% |
| gamdpy/calculators/calculator_widom_insertion.py |
CalculatorWidomInsertion._update_CPU |
16 |
16 |
0 |
0% |
| gamdpy/calculators/calculator_widom_insertion.py |
CalculatorWidomInsertion._make_updater_kernel |
15 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_widom_insertion.py |
CalculatorWidomInsertion._make_updater_kernel.update_kernel |
14 |
14 |
0 |
0% |
| gamdpy/calculators/calculator_widom_insertion.py |
CalculatorWidomInsertion.update |
13 |
2 |
0 |
85% |
| gamdpy/calculators/calculator_widom_insertion.py |
CalculatorWidomInsertion.read |
1 |
0 |
0 |
100% |
| gamdpy/calculators/calculator_widom_insertion.py |
(no function) |
12 |
0 |
0 |
100% |
| gamdpy/cc_cores_per_SM_dict.py |
(no function) |
1 |
0 |
0 |
100% |
| gamdpy/configuration/Configuration.py |
Configuration.__init__ |
44 |
4 |
0 |
91% |
| gamdpy/configuration/Configuration.py |
Configuration.__allocate_arrays |
5 |
0 |
0 |
100% |
| gamdpy/configuration/Configuration.py |
Configuration.__repr__ |
1 |
1 |
0 |
0% |
| gamdpy/configuration/Configuration.py |
Configuration.__code__ |
10 |
10 |
0 |
0% |
| gamdpy/configuration/Configuration.py |
Configuration.__str__ |
15 |
1 |
0 |
93% |
| gamdpy/configuration/Configuration.py |
Configuration.__setitem__ |
12 |
2 |
0 |
83% |
| gamdpy/configuration/Configuration.py |
Configuration.__set_vector |
8 |
2 |
0 |
75% |
| gamdpy/configuration/Configuration.py |
Configuration.__set_scalar |
6 |
1 |
0 |
83% |
| gamdpy/configuration/Configuration.py |
Configuration.__getitem__ |
5 |
1 |
0 |
80% |
| gamdpy/configuration/Configuration.py |
Configuration.copy_to_device |
6 |
0 |
0 |
100% |
| gamdpy/configuration/Configuration.py |
Configuration.copy_to_host |
6 |
0 |
0 |
100% |
| gamdpy/configuration/Configuration.py |
Configuration.make_ptype_function |
2 |
0 |
0 |
100% |
| gamdpy/configuration/Configuration.py |
Configuration.make_ptype_function.ptype_function |
2 |
2 |
0 |
0% |
| gamdpy/configuration/Configuration.py |
Configuration.get_potential_energy |
1 |
1 |
0 |
0% |
| gamdpy/configuration/Configuration.py |
Configuration.get_volume |
1 |
0 |
0 |
100% |
| gamdpy/configuration/Configuration.py |
Configuration.set_kinetic_temperature |
6 |
1 |
0 |
83% |
| gamdpy/configuration/Configuration.py |
Configuration.randomize_velocities |
9 |
3 |
0 |
67% |
| gamdpy/configuration/Configuration.py |
Configuration.make_lattice |
5 |
0 |
0 |
100% |
| gamdpy/configuration/Configuration.py |
Configuration.make_positions |
30 |
0 |
0 |
100% |
| gamdpy/configuration/Configuration.py |
Configuration.atomic_scale |
4 |
0 |
0 |
100% |
| gamdpy/configuration/Configuration.py |
Configuration.save |
22 |
7 |
0 |
68% |
| gamdpy/configuration/Configuration.py |
Configuration.from_h5 |
21 |
5 |
0 |
76% |
| gamdpy/configuration/Configuration.py |
generate_random_velocities |
7 |
0 |
0 |
100% |
| gamdpy/configuration/Configuration.py |
generate_fcc_positions |
17 |
17 |
0 |
0% |
| gamdpy/configuration/Configuration.py |
make_configuration_fcc |
15 |
15 |
0 |
0% |
| gamdpy/configuration/Configuration.py |
replicate_molecules |
58 |
0 |
0 |
100% |
| gamdpy/configuration/Configuration.py |
(no function) |
42 |
0 |
0 |
100% |
| gamdpy/configuration/__init__.py |
(no function) |
1 |
0 |
0 |
100% |
| gamdpy/configuration/colarray.py |
colarray.__init__ |
7 |
0 |
0 |
100% |
| gamdpy/configuration/colarray.py |
colarray.__setitem__ |
1 |
0 |
0 |
100% |
| gamdpy/configuration/colarray.py |
colarray.__getitem__ |
1 |
0 |
0 |
100% |
| gamdpy/configuration/colarray.py |
colarray.__repr__ |
1 |
1 |
0 |
0% |
| gamdpy/configuration/colarray.py |
colarray.copy |
1 |
0 |
0 |
100% |
| gamdpy/configuration/colarray.py |
colarray.save |
6 |
0 |
0 |
100% |
| gamdpy/configuration/colarray.py |
colarray.load |
7 |
0 |
0 |
100% |
| gamdpy/configuration/colarray.py |
colarray.remove_files |
3 |
0 |
0 |
100% |
| gamdpy/configuration/colarray.py |
(no function) |
10 |
0 |
0 |
100% |
| gamdpy/configuration/make_lattice.py |
make_lattice |
25 |
1 |
0 |
96% |
| gamdpy/configuration/make_lattice.py |
(no function) |
1 |
0 |
0 |
100% |
| gamdpy/configuration/old_input_output.py |
configuration_from_hdf5 |
20 |
2 |
0 |
90% |
| gamdpy/configuration/old_input_output.py |
configuration_to_rumd3 |
29 |
3 |
0 |
90% |
| gamdpy/configuration/old_input_output.py |
configuration_from_rumd3 |
45 |
1 |
0 |
98% |
| gamdpy/configuration/old_input_output.py |
configuration_to_lammps |
39 |
6 |
0 |
85% |
| gamdpy/configuration/old_input_output.py |
(no function) |
17 |
0 |
0 |
100% |
| gamdpy/configuration/topology.py |
Topology.__init__ |
7 |
0 |
0 |
100% |
| gamdpy/configuration/topology.py |
Topology.add_molecule_name |
1 |
0 |
0 |
100% |
| gamdpy/configuration/topology.py |
Topology.save |
8 |
0 |
0 |
100% |
| gamdpy/configuration/topology.py |
bonds_from_positions |
7 |
0 |
0 |
100% |
| gamdpy/configuration/topology.py |
angles_from_bonds |
12 |
0 |
0 |
100% |
| gamdpy/configuration/topology.py |
dihedrals_from_angles |
12 |
0 |
0 |
100% |
| gamdpy/configuration/topology.py |
molecules_from_bonds |
17 |
5 |
0 |
71% |
| gamdpy/configuration/topology.py |
duplicate_topology |
19 |
19 |
0 |
0% |
| gamdpy/configuration/topology.py |
replicate_topologies |
27 |
0 |
0 |
100% |
| gamdpy/configuration/topology.py |
(no function) |
13 |
0 |
0 |
100% |
| gamdpy/configuration/unit_cells.py |
(no function) |
3 |
0 |
0 |
100% |
| gamdpy/integrators/NPT_Atomic.py |
NPT_Atomic.__init__ |
7 |
0 |
0 |
100% |
| gamdpy/integrators/NPT_Atomic.py |
NPT_Atomic.get_params |
9 |
0 |
0 |
100% |
| gamdpy/integrators/NPT_Atomic.py |
NPT_Atomic.get_kernel |
31 |
2 |
15 |
94% |
| gamdpy/integrators/NPT_Atomic.py |
NPT_Atomic.get_kernel.step |
0 |
0 |
40 |
100% |
| gamdpy/integrators/NPT_Atomic.py |
NPT_Atomic.get_kernel.update_thermostat_barostat_state |
0 |
0 |
29 |
100% |
| gamdpy/integrators/NPT_Atomic.py |
NPT_Atomic.get_kernel.scale_box |
0 |
0 |
10 |
100% |
| gamdpy/integrators/NPT_Atomic.py |
NPT_Atomic.get_kernel.kernel |
0 |
0 |
6 |
100% |
| gamdpy/integrators/NPT_Atomic.py |
(no function) |
10 |
0 |
0 |
100% |
| gamdpy/integrators/NPT_Langevin.py |
NPT_Langevin.__init__ |
10 |
0 |
0 |
100% |
| gamdpy/integrators/NPT_Langevin.py |
NPT_Langevin.get_params |
11 |
0 |
0 |
100% |
| gamdpy/integrators/NPT_Langevin.py |
NPT_Langevin.get_kernel |
43 |
8 |
0 |
81% |
| gamdpy/integrators/NPT_Langevin.py |
NPT_Langevin.get_kernel.copyParticleVirial |
6 |
6 |
0 |
0% |
| gamdpy/integrators/NPT_Langevin.py |
NPT_Langevin.get_kernel.update_barostat_state |
33 |
33 |
0 |
0% |
| gamdpy/integrators/NPT_Langevin.py |
NPT_Langevin.get_kernel.step |
33 |
33 |
0 |
0% |
| gamdpy/integrators/NPT_Langevin.py |
NPT_Langevin.get_kernel.kernel |
6 |
6 |
0 |
0% |
| gamdpy/integrators/NPT_Langevin.py |
(no function) |
12 |
0 |
0 |
100% |
| gamdpy/integrators/NVE.py |
NVE.__init__ |
1 |
0 |
0 |
100% |
| gamdpy/integrators/NVE.py |
NVE.get_params |
2 |
0 |
0 |
100% |
| gamdpy/integrators/NVE.py |
NVE.get_kernel |
22 |
4 |
0 |
82% |
| gamdpy/integrators/NVE.py |
NVE.get_kernel.step |
28 |
28 |
0 |
0% |
| gamdpy/integrators/NVE.py |
(no function) |
9 |
0 |
0 |
100% |
| gamdpy/integrators/NVT.py |
NVT.__init__ |
5 |
0 |
0 |
100% |
| gamdpy/integrators/NVT.py |
NVT.get_params |
4 |
0 |
0 |
100% |
| gamdpy/integrators/NVT.py |
NVT.get_kernel |
33 |
4 |
0 |
88% |
| gamdpy/integrators/NVT.py |
NVT.get_kernel.step |
26 |
26 |
0 |
0% |
| gamdpy/integrators/NVT.py |
NVT.get_kernel.update_thermostat_state |
8 |
8 |
0 |
0% |
| gamdpy/integrators/NVT.py |
NVT.get_kernel.kernel |
4 |
4 |
0 |
0% |
| gamdpy/integrators/NVT.py |
(no function) |
9 |
0 |
0 |
100% |
| gamdpy/integrators/NVT_Langevin.py |
NVT_Langevin.__init__ |
4 |
0 |
0 |
100% |
| gamdpy/integrators/NVT_Langevin.py |
NVT_Langevin.get_params |
6 |
0 |
0 |
100% |
| gamdpy/integrators/NVT_Langevin.py |
NVT_Langevin.get_kernel |
26 |
5 |
0 |
81% |
| gamdpy/integrators/NVT_Langevin.py |
NVT_Langevin.get_kernel.step |
32 |
32 |
0 |
0% |
| gamdpy/integrators/NVT_Langevin.py |
(no function) |
12 |
0 |
0 |
100% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.__init__ |
33 |
33 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_params |
1 |
1 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.update_at_end_of_timeblock |
9 |
9 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_kernel |
37 |
37 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_kernel.kernel |
58 |
58 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_kernel.save_potential_energy_path |
21 |
21 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_update_velocities_kernel |
25 |
25 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_update_velocities_kernel.update_velocities_kernel |
14 |
14 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_setup_kernel |
101 |
101 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_setup_kernel.kernel_setup |
60 |
60 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_setup_kernel.setup_raytracing |
1 |
1 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_setup_kernel.get_second_derivative |
8 |
8 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_setup_kernel.integrator_setup |
2 |
2 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_kernel_parabola |
8 |
8 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_kernel_parabola.parabola_kernel |
55 |
55 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_kernel_parabola_newton |
10 |
10 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_kernel_parabola_newton.parabola_newton_kernel |
41 |
41 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_kernel_parabola_newton.get_first_derivative |
11 |
11 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_kernel_bisection |
18 |
18 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_kernel_bisection.bisection_kernel |
54 |
54 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_kernel_bisection.perform_find_point_above |
52 |
52 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
NVU_RT.get_kernel_bisection.perform_bisection |
46 |
46 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
util_functions |
8 |
8 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
util_functions.get_dot_in_conf_space |
6 |
6 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
util_functions.copy_positions_and_images |
5 |
5 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
util_functions.calculate_potential_energy |
10 |
10 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
util_functions.add_step_in_dir |
6 |
6 |
0 |
0% |
| gamdpy/integrators/NVU_RT.py |
(no function) |
23 |
1 |
0 |
96% |
| gamdpy/integrators/SLLOD.py |
SLLOD.__init__ |
2 |
0 |
0 |
100% |
| gamdpy/integrators/SLLOD.py |
SLLOD.get_params |
11 |
0 |
0 |
100% |
| gamdpy/integrators/SLLOD.py |
SLLOD.get_kernel |
22 |
1 |
18 |
95% |
| gamdpy/integrators/SLLOD.py |
SLLOD.get_kernel.call_update_box_shift |
0 |
0 |
5 |
100% |
| gamdpy/integrators/SLLOD.py |
SLLOD.get_kernel.integrate_sllod_b1 |
0 |
0 |
40 |
100% |
| gamdpy/integrators/SLLOD.py |
SLLOD.get_kernel.integrate_sllod_b2 |
0 |
0 |
49 |
100% |
| gamdpy/integrators/SLLOD.py |
SLLOD.get_kernel.integrate_sllod_a_b1 |
0 |
0 |
53 |
100% |
| gamdpy/integrators/SLLOD.py |
SLLOD.get_kernel.kernel |
0 |
0 |
11 |
100% |
| gamdpy/integrators/SLLOD.py |
(no function) |
10 |
0 |
0 |
100% |
| gamdpy/integrators/__init__.py |
(no function) |
8 |
0 |
0 |
100% |
| gamdpy/integrators/integrator.py |
Integrator.get_kernel |
1 |
1 |
0 |
0% |
| gamdpy/integrators/integrator.py |
Integrator.get_params |
1 |
1 |
0 |
0% |
| gamdpy/integrators/integrator.py |
(no function) |
7 |
0 |
0 |
100% |
| gamdpy/interactions/__init__.py |
(no function) |
13 |
0 |
0 |
100% |
| gamdpy/interactions/angles.py |
Angles.__init__ |
3 |
0 |
0 |
100% |
| gamdpy/interactions/angles.py |
Angles.get_params |
3 |
0 |
0 |
100% |
| gamdpy/interactions/angles.py |
Angles.get_kernel |
31 |
3 |
0 |
90% |
| gamdpy/interactions/angles.py |
Angles.get_kernel.angle_calculator |
31 |
31 |
0 |
0% |
| gamdpy/interactions/angles.py |
Angles.get_exclusions |
19 |
19 |
0 |
0% |
| gamdpy/interactions/angles.py |
Angles.get_angle |
13 |
0 |
0 |
100% |
| gamdpy/interactions/angles.py |
angles_get_dist_vector |
7 |
0 |
0 |
100% |
| gamdpy/interactions/angles.py |
angles_entry_not_exists |
4 |
4 |
0 |
0% |
| gamdpy/interactions/angles.py |
(no function) |
15 |
0 |
0 |
100% |
| gamdpy/interactions/bonds.py |
Bonds.__init__ |
3 |
0 |
0 |
100% |
| gamdpy/interactions/bonds.py |
Bonds.get_params |
13 |
2 |
0 |
85% |
| gamdpy/interactions/bonds.py |
Bonds.get_kernel |
35 |
7 |
0 |
80% |
| gamdpy/interactions/bonds.py |
Bonds.get_kernel.bond_calculator |
29 |
29 |
0 |
0% |
| gamdpy/interactions/bonds.py |
Bonds.get_exclusions |
10 |
0 |
0 |
100% |
| gamdpy/interactions/bonds.py |
(no function) |
12 |
0 |
0 |
100% |
| gamdpy/interactions/dihedrals.py |
Dihedrals.__init__ |
3 |
0 |
0 |
100% |
| gamdpy/interactions/dihedrals.py |
Dihedrals.get_params |
3 |
0 |
0 |
100% |
| gamdpy/interactions/dihedrals.py |
Dihedrals.get_kernel |
30 |
3 |
0 |
90% |
| gamdpy/interactions/dihedrals.py |
Dihedrals.get_kernel.dihedral_calculator |
48 |
48 |
0 |
0% |
| gamdpy/interactions/dihedrals.py |
Dihedrals.get_exclusions |
21 |
1 |
0 |
95% |
| gamdpy/interactions/dihedrals.py |
Dihedrals.get_dihedral |
21 |
0 |
0 |
100% |
| gamdpy/interactions/dihedrals.py |
dihedrals_get_dist_vector |
7 |
0 |
0 |
100% |
| gamdpy/interactions/dihedrals.py |
dihedrals_entry_not_exists |
4 |
0 |
0 |
100% |
| gamdpy/interactions/dihedrals.py |
(no function) |
16 |
0 |
0 |
100% |
| gamdpy/interactions/gravity.py |
Gravity.__init__ |
1 |
0 |
0 |
100% |
| gamdpy/interactions/gravity.py |
Gravity.set_gravity_from_lists |
9 |
9 |
0 |
0% |
| gamdpy/interactions/gravity.py |
Gravity.set_gravity_from_types |
15 |
1 |
0 |
93% |
| gamdpy/interactions/gravity.py |
Gravity.get_params |
5 |
1 |
0 |
80% |
| gamdpy/interactions/gravity.py |
Gravity.get_kernel |
7 |
0 |
0 |
100% |
| gamdpy/interactions/gravity.py |
Gravity.get_kernel.gravity_calculator |
3 |
3 |
0 |
0% |
| gamdpy/interactions/gravity.py |
(no function) |
13 |
0 |
0 |
100% |
| gamdpy/interactions/interaction.py |
Interaction.get_kernel |
1 |
1 |
0 |
0% |
| gamdpy/interactions/interaction.py |
Interaction.get_params |
1 |
1 |
0 |
0% |
| gamdpy/interactions/interaction.py |
Interaction.check_datastructure_validity |
1 |
0 |
0 |
100% |
| gamdpy/interactions/interaction.py |
merge_interactions |
11 |
0 |
0 |
100% |
| gamdpy/interactions/interaction.py |
merge_interactions.interactions |
4 |
4 |
0 |
0% |
| gamdpy/interactions/interaction.py |
add_interactions_list |
7 |
0 |
0 |
100% |
| gamdpy/interactions/interaction.py |
get_initializer_params |
1 |
0 |
0 |
100% |
| gamdpy/interactions/interaction.py |
get_initializer_kernel |
18 |
1 |
0 |
94% |
| gamdpy/interactions/interaction.py |
get_initializer_kernel.kernel |
16 |
16 |
0 |
0% |
| gamdpy/interactions/interaction.py |
add_interactions_list_old |
31 |
31 |
0 |
0% |
| gamdpy/interactions/interaction.py |
add_interactions_list_old.interactions |
14 |
14 |
0 |
0% |
| gamdpy/interactions/interaction.py |
(no function) |
16 |
0 |
0 |
100% |
| gamdpy/interactions/make_fixed_interactions.py |
make_fixed_interactions |
14 |
5 |
0 |
64% |
| gamdpy/interactions/make_fixed_interactions.py |
make_fixed_interactions.fixed_interactions |
10 |
10 |
0 |
0% |
| gamdpy/interactions/make_fixed_interactions.py |
(no function) |
3 |
0 |
0 |
100% |
| gamdpy/interactions/nblist.py |
NbList2.__init__ |
5 |
0 |
0 |
100% |
| gamdpy/interactions/nblist.py |
NbList2.copy_to_device |
4 |
0 |
0 |
100% |
| gamdpy/interactions/nblist.py |
NbList2.get_params |
7 |
0 |
0 |
100% |
| gamdpy/interactions/nblist.py |
NbList2.get_kernel |
29 |
1 |
0 |
97% |
| gamdpy/interactions/nblist.py |
NbList2.get_kernel.nblist_check |
8 |
8 |
0 |
0% |
| gamdpy/interactions/nblist.py |
NbList2.get_kernel.nblist_update |
41 |
41 |
0 |
0% |
| gamdpy/interactions/nblist.py |
NbList2.get_kernel.check_and_update |
5 |
5 |
0 |
0% |
| gamdpy/interactions/nblist.py |
(no function) |
8 |
0 |
0 |
100% |
| gamdpy/interactions/nblist_linked_lists.py |
NbListLinkedLists.__init__ |
7 |
0 |
0 |
100% |
| gamdpy/interactions/nblist_linked_lists.py |
NbListLinkedLists.copy_to_device |
8 |
0 |
0 |
100% |
| gamdpy/interactions/nblist_linked_lists.py |
NbListLinkedLists.get_params |
18 |
1 |
0 |
94% |
| gamdpy/interactions/nblist_linked_lists.py |
NbListLinkedLists.get_kernel |
19 |
0 |
10 |
100% |
| gamdpy/interactions/nblist_linked_lists.py |
NbListLinkedLists.get_kernel.nblist_check |
0 |
0 |
17 |
100% |
| gamdpy/interactions/nblist_linked_lists.py |
NbListLinkedLists.get_kernel.put_particles_in_cells |
0 |
0 |
14 |
100% |
| gamdpy/interactions/nblist_linked_lists.py |
NbListLinkedLists.get_kernel.nblist_update_from_linked_lists |
0 |
0 |
60 |
100% |
| gamdpy/interactions/nblist_linked_lists.py |
NbListLinkedLists.get_kernel.clear_cells |
0 |
0 |
15 |
100% |
| gamdpy/interactions/nblist_linked_lists.py |
NbListLinkedLists.get_kernel.check_and_update |
0 |
0 |
10 |
100% |
| gamdpy/interactions/nblist_linked_lists.py |
(no function) |
9 |
0 |
0 |
100% |
| gamdpy/interactions/pair_potential.py |
PairPotential.__init__ |
6 |
0 |
0 |
100% |
| gamdpy/interactions/pair_potential.py |
PairPotential.__init__.params_function |
2 |
2 |
0 |
0% |
| gamdpy/interactions/pair_potential.py |
PairPotential.convert_user_params |
20 |
0 |
0 |
100% |
| gamdpy/interactions/pair_potential.py |
PairPotential.plot |
17 |
17 |
0 |
0% |
| gamdpy/interactions/pair_potential.py |
PairPotential.evaluate_potential_function |
3 |
3 |
0 |
0% |
| gamdpy/interactions/pair_potential.py |
PairPotential.check_datastructure_validity |
4 |
1 |
0 |
75% |
| gamdpy/interactions/pair_potential.py |
PairPotential.get_params |
9 |
1 |
0 |
89% |
| gamdpy/interactions/pair_potential.py |
PairPotential.get_kernel |
66 |
20 |
0 |
70% |
| gamdpy/interactions/pair_potential.py |
PairPotential.get_kernel.pairpotential_calculator |
14 |
14 |
0 |
0% |
| gamdpy/interactions/pair_potential.py |
PairPotential.get_kernel.calc_forces |
43 |
43 |
0 |
0% |
| gamdpy/interactions/pair_potential.py |
PairPotential.get_kernel.compute_interactions |
5 |
5 |
0 |
0% |
| gamdpy/interactions/pair_potential.py |
(no function) |
15 |
0 |
0 |
100% |
| gamdpy/interactions/planar.py |
Planar.__init__ |
9 |
0 |
0 |
100% |
| gamdpy/interactions/planar.py |
Planar.get_kernel |
7 |
0 |
0 |
100% |
| gamdpy/interactions/planar.py |
Planar.get_kernel.calculator |
17 |
17 |
0 |
0% |
| gamdpy/interactions/planar.py |
Planar.get_params |
6 |
0 |
0 |
100% |
| gamdpy/interactions/planar.py |
(no function) |
11 |
0 |
0 |
100% |
| gamdpy/interactions/planar_interactions.py |
make_planar_calculator |
6 |
0 |
1 |
100% |
| gamdpy/interactions/planar_interactions.py |
make_planar_calculator.planar_calculator |
0 |
0 |
23 |
100% |
| gamdpy/interactions/planar_interactions.py |
setup_planar_interactions |
27 |
0 |
0 |
100% |
| gamdpy/interactions/planar_interactions.py |
(no function) |
7 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/LJ_12_6.py |
LJ_12_6 |
7 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/LJ_12_6.py |
(no function) |
2 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/LJ_12_6_sigma_epsilon.py |
LJ_12_6_sigma_epsilon |
8 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/LJ_12_6_sigma_epsilon.py |
(no function) |
5 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/SAAP.py |
SAAP |
25 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/SAAP.py |
(no function) |
3 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/__init__.py |
(no function) |
14 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/add_potential_functions.py |
add_potential_functions |
3 |
0 |
1 |
100% |
| gamdpy/interactions/potential_functions/add_potential_functions.py |
add_potential_functions.potential |
0 |
0 |
3 |
100% |
| gamdpy/interactions/potential_functions/add_potential_functions.py |
(no function) |
3 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/apply_shifted_force_cutoff.py |
apply_shifted_force_cutoff |
2 |
0 |
2 |
100% |
| gamdpy/interactions/potential_functions/apply_shifted_force_cutoff.py |
apply_shifted_force_cutoff.potential |
0 |
0 |
7 |
100% |
| gamdpy/interactions/potential_functions/apply_shifted_force_cutoff.py |
(no function) |
2 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/apply_shifted_potential_cutoff.py |
apply_shifted_potential_cutoff |
2 |
0 |
2 |
100% |
| gamdpy/interactions/potential_functions/apply_shifted_potential_cutoff.py |
apply_shifted_potential_cutoff.potential |
0 |
0 |
5 |
100% |
| gamdpy/interactions/potential_functions/apply_shifted_potential_cutoff.py |
(no function) |
5 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/cos_angle_function.py |
cos_angle_function |
7 |
7 |
0 |
0% |
| gamdpy/interactions/potential_functions/cos_angle_function.py |
(no function) |
5 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/harmonic_bond_function.py |
harmonic_bond_function |
6 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/harmonic_bond_function.py |
(no function) |
5 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/harmonic_repulsion.py |
harmonic_repulsion |
10 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/harmonic_repulsion.py |
(no function) |
2 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/hertzian.py |
hertzian |
11 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/hertzian.py |
(no function) |
2 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/make_IPL_n.py |
make_IPL_n |
1 |
0 |
4 |
100% |
| gamdpy/interactions/potential_functions/make_IPL_n.py |
make_IPL_n.IPL_n |
0 |
0 |
7 |
100% |
| gamdpy/interactions/potential_functions/make_IPL_n.py |
(no function) |
5 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/make_LJ_m_n.py |
make_LJ_m_n |
1 |
0 |
4 |
100% |
| gamdpy/interactions/potential_functions/make_LJ_m_n.py |
make_LJ_m_n.LJ_m_n |
0 |
0 |
9 |
100% |
| gamdpy/interactions/potential_functions/make_LJ_m_n.py |
(no function) |
5 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/make_potential_function_from_sympy.py |
make_potential_function_from_sympy |
10 |
0 |
1 |
100% |
| gamdpy/interactions/potential_functions/make_potential_function_from_sympy.py |
make_potential_function_from_sympy.potential_function |
0 |
0 |
4 |
100% |
| gamdpy/interactions/potential_functions/make_potential_function_from_sympy.py |
(no function) |
5 |
0 |
0 |
100% |
| gamdpy/interactions/potential_functions/ryckbell_dihedral.py |
ryckbell_dihedral |
7 |
7 |
0 |
0% |
| gamdpy/interactions/potential_functions/ryckbell_dihedral.py |
(no function) |
5 |
0 |
0 |
100% |
| gamdpy/interactions/relaxtemp.py |
Relaxtemp.__init__ |
1 |
0 |
0 |
100% |
| gamdpy/interactions/relaxtemp.py |
Relaxtemp.set_relaxation_from_lists |
10 |
10 |
0 |
0% |
| gamdpy/interactions/relaxtemp.py |
Relaxtemp.set_relaxation_from_types |
15 |
1 |
0 |
93% |
| gamdpy/interactions/relaxtemp.py |
Relaxtemp.get_params |
5 |
1 |
0 |
80% |
| gamdpy/interactions/relaxtemp.py |
Relaxtemp.get_kernel |
7 |
0 |
0 |
100% |
| gamdpy/interactions/relaxtemp.py |
Relaxtemp.get_kernel.relaxtemp_calculator |
10 |
10 |
0 |
0% |
| gamdpy/interactions/relaxtemp.py |
(no function) |
13 |
0 |
0 |
100% |
| gamdpy/interactions/tether.py |
Tether.__init__ |
1 |
0 |
0 |
100% |
| gamdpy/interactions/tether.py |
Tether.set_anchor_points_from_lists |
11 |
1 |
0 |
91% |
| gamdpy/interactions/tether.py |
Tether.set_anchor_points_from_types |
15 |
1 |
0 |
93% |
| gamdpy/interactions/tether.py |
Tether.get_params |
5 |
1 |
0 |
80% |
| gamdpy/interactions/tether.py |
Tether.get_kernel |
10 |
0 |
0 |
100% |
| gamdpy/interactions/tether.py |
Tether.get_kernel.tether_calculator |
9 |
9 |
0 |
0% |
| gamdpy/interactions/tether.py |
(no function) |
12 |
0 |
0 |
100% |
| gamdpy/misc/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| gamdpy/misc/extract_scalars.py |
extract_scalars |
12 |
3 |
0 |
75% |
| gamdpy/misc/extract_scalars.py |
(no function) |
1 |
0 |
0 |
100% |
| gamdpy/misc/make_function.py |
make_function_constant |
3 |
0 |
0 |
100% |
| gamdpy/misc/make_function.py |
make_function_constant.function |
1 |
1 |
0 |
0% |
| gamdpy/misc/make_function.py |
make_function_ramp |
4 |
0 |
0 |
100% |
| gamdpy/misc/make_function.py |
make_function_ramp.function |
5 |
5 |
0 |
0% |
| gamdpy/misc/make_function.py |
make_function_sin |
4 |
4 |
0 |
0% |
| gamdpy/misc/make_function.py |
make_function_sin.function |
1 |
1 |
0 |
0% |
| gamdpy/misc/make_function.py |
(no function) |
7 |
0 |
0 |
100% |
| gamdpy/misc/plot_molecule.py |
plot_molecule |
23 |
4 |
0 |
83% |
| gamdpy/misc/plot_molecule.py |
(no function) |
3 |
0 |
0 |
100% |
| gamdpy/misc/plot_scalars.py |
plot_scalars_old |
43 |
43 |
0 |
0% |
| gamdpy/misc/plot_scalars.py |
plot_scalars |
43 |
8 |
0 |
81% |
| gamdpy/misc/plot_scalars.py |
(no function) |
8 |
0 |
0 |
100% |
| gamdpy/misc/select_gpu.py |
select_gpu |
8 |
2 |
0 |
75% |
| gamdpy/misc/select_gpu.py |
(no function) |
4 |
1 |
0 |
75% |
| gamdpy/runtime_actions/__init__.py |
(no function) |
6 |
0 |
0 |
100% |
| gamdpy/runtime_actions/momentum_reset.py |
MomentumReset.__init__ |
3 |
1 |
0 |
67% |
| gamdpy/runtime_actions/momentum_reset.py |
MomentumReset.setup |
1 |
0 |
0 |
100% |
| gamdpy/runtime_actions/momentum_reset.py |
MomentumReset.get_params |
3 |
0 |
0 |
100% |
| gamdpy/runtime_actions/momentum_reset.py |
MomentumReset.get_prestep_kernel |
7 |
0 |
0 |
100% |
| gamdpy/runtime_actions/momentum_reset.py |
MomentumReset.get_prestep_kernel.kernel |
2 |
2 |
0 |
0% |
| gamdpy/runtime_actions/momentum_reset.py |
MomentumReset.get_poststep_kernel |
23 |
0 |
0 |
100% |
| gamdpy/runtime_actions/momentum_reset.py |
MomentumReset.get_poststep_kernel.zero_momentum |
5 |
5 |
0 |
0% |
| gamdpy/runtime_actions/momentum_reset.py |
MomentumReset.get_poststep_kernel.sum_momentum |
7 |
7 |
0 |
0% |
| gamdpy/runtime_actions/momentum_reset.py |
MomentumReset.get_poststep_kernel.shift_velocities |
5 |
5 |
0 |
0% |
| gamdpy/runtime_actions/momentum_reset.py |
MomentumReset.get_poststep_kernel.kernel |
8 |
8 |
0 |
0% |
| gamdpy/runtime_actions/momentum_reset.py |
(no function) |
12 |
0 |
0 |
100% |
| gamdpy/runtime_actions/restart_saver.py |
RestartSaver.__init__ |
1 |
0 |
0 |
100% |
| gamdpy/runtime_actions/restart_saver.py |
RestartSaver.setup |
5 |
1 |
0 |
80% |
| gamdpy/runtime_actions/restart_saver.py |
RestartSaver.get_params |
1 |
0 |
0 |
100% |
| gamdpy/runtime_actions/restart_saver.py |
RestartSaver.initialize_before_timeblock |
1 |
0 |
0 |
100% |
| gamdpy/runtime_actions/restart_saver.py |
RestartSaver.update_at_end_of_timeblock |
1 |
0 |
0 |
100% |
| gamdpy/runtime_actions/restart_saver.py |
RestartSaver.get_prestep_kernel |
7 |
3 |
0 |
57% |
| gamdpy/runtime_actions/restart_saver.py |
RestartSaver.get_prestep_kernel.kernel |
2 |
2 |
0 |
0% |
| gamdpy/runtime_actions/restart_saver.py |
RestartSaver.get_poststep_kernel |
7 |
3 |
0 |
57% |
| gamdpy/runtime_actions/restart_saver.py |
RestartSaver.get_poststep_kernel.kernel |
2 |
2 |
0 |
0% |
| gamdpy/runtime_actions/restart_saver.py |
(no function) |
14 |
0 |
0 |
100% |
| gamdpy/runtime_actions/runtime_action.py |
RuntimeAction.get_compute_flags |
1 |
0 |
0 |
100% |
| gamdpy/runtime_actions/runtime_action.py |
RuntimeAction.setup |
1 |
1 |
0 |
0% |
| gamdpy/runtime_actions/runtime_action.py |
RuntimeAction.get_prestep_kernel |
1 |
1 |
0 |
0% |
| gamdpy/runtime_actions/runtime_action.py |
RuntimeAction.get_poststep_kernel |
1 |
1 |
0 |
0% |
| gamdpy/runtime_actions/runtime_action.py |
RuntimeAction.get_params |
1 |
1 |
0 |
0% |
| gamdpy/runtime_actions/runtime_action.py |
RuntimeAction.update_at_end_of_timeblock |
1 |
0 |
0 |
100% |
| gamdpy/runtime_actions/runtime_action.py |
RuntimeAction.initialize_before_timeblock |
1 |
0 |
0 |
100% |
| gamdpy/runtime_actions/runtime_action.py |
merge_runtime_actions |
18 |
0 |
0 |
100% |
| gamdpy/runtime_actions/runtime_action.py |
merge_runtime_actions.prestep_kernel |
4 |
4 |
0 |
0% |
| gamdpy/runtime_actions/runtime_action.py |
merge_runtime_actions.poststep_kernel |
4 |
4 |
0 |
0% |
| gamdpy/runtime_actions/runtime_action.py |
add_runtime_actions_list |
9 |
0 |
0 |
100% |
| gamdpy/runtime_actions/runtime_action.py |
(no function) |
17 |
0 |
0 |
100% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.__init__ |
8 |
2 |
0 |
75% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.get_compute_flags |
1 |
0 |
0 |
100% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.setup |
38 |
4 |
0 |
89% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.make_zero_kernel |
3 |
0 |
0 |
100% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.make_zero_kernel.zero_kernel |
4 |
4 |
0 |
0% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.get_params |
4 |
0 |
0 |
100% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.initialize_before_timeblock |
1 |
0 |
0 |
100% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.update_at_end_of_timeblock |
1 |
0 |
0 |
100% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.get_prestep_kernel |
7 |
0 |
0 |
100% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.get_prestep_kernel.kernel |
2 |
2 |
0 |
0% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.get_poststep_kernel |
17 |
0 |
0 |
100% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.get_poststep_kernel.kernel |
26 |
26 |
0 |
0% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.info |
4 |
4 |
0 |
0% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.columns |
1 |
1 |
0 |
0% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.extract |
13 |
13 |
0 |
0% |
| gamdpy/runtime_actions/scalar_saver.py |
ScalarSaver.get_times |
3 |
3 |
0 |
0% |
| gamdpy/runtime_actions/scalar_saver.py |
(no function) |
20 |
0 |
0 |
100% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.__init__ |
5 |
1 |
0 |
80% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.get_compute_flags |
1 |
0 |
0 |
100% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.setup |
23 |
5 |
0 |
78% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.make_zero_kernel_3 |
3 |
0 |
0 |
100% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.make_zero_kernel_3.zero_kernel |
5 |
5 |
0 |
0% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.get_params |
5 |
0 |
0 |
100% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.initialize_before_timeblock |
1 |
0 |
0 |
100% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.update_at_end_of_timeblock |
2 |
0 |
0 |
100% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.get_prestep_kernel |
16 |
2 |
0 |
88% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.get_prestep_kernel.kernel |
15 |
15 |
0 |
0% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.get_poststep_kernel |
7 |
3 |
0 |
57% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.get_poststep_kernel.kernel |
2 |
2 |
0 |
0% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.extract |
5 |
0 |
0 |
100% |
| gamdpy/runtime_actions/stress_saver.py |
StressSaver.get_times |
3 |
3 |
0 |
0% |
| gamdpy/runtime_actions/stress_saver.py |
extract_stress_tensor |
4 |
0 |
0 |
100% |
| gamdpy/runtime_actions/stress_saver.py |
(no function) |
18 |
0 |
0 |
100% |
| gamdpy/runtime_actions/trajectory_saver.py |
TrajectorySaver.__init__ |
6 |
1 |
0 |
83% |
| gamdpy/runtime_actions/trajectory_saver.py |
TrajectorySaver.setup |
24 |
5 |
0 |
79% |
| gamdpy/runtime_actions/trajectory_saver.py |
TrajectorySaver.get_params |
7 |
0 |
0 |
100% |
| gamdpy/runtime_actions/trajectory_saver.py |
TrajectorySaver.make_zero_kernel |
6 |
0 |
0 |
100% |
| gamdpy/runtime_actions/trajectory_saver.py |
TrajectorySaver.make_zero_kernel.zero_kernel |
7 |
7 |
0 |
0% |
| gamdpy/runtime_actions/trajectory_saver.py |
TrajectorySaver.update_at_end_of_timeblock |
5 |
0 |
0 |
100% |
| gamdpy/runtime_actions/trajectory_saver.py |
TrajectorySaver.get_poststep_kernel |
7 |
0 |
0 |
100% |
| gamdpy/runtime_actions/trajectory_saver.py |
TrajectorySaver.get_poststep_kernel.kernel |
2 |
2 |
0 |
0% |
| gamdpy/runtime_actions/trajectory_saver.py |
TrajectorySaver.get_prestep_kernel |
11 |
0 |
0 |
100% |
| gamdpy/runtime_actions/trajectory_saver.py |
TrajectorySaver.get_prestep_kernel.kernel |
22 |
22 |
0 |
0% |
| gamdpy/runtime_actions/trajectory_saver.py |
(no function) |
13 |
0 |
0 |
100% |
| gamdpy/simulation/Simulation.py |
Simulation.__init__ |
55 |
4 |
0 |
93% |
| gamdpy/simulation/Simulation.py |
Simulation.get_output |
6 |
1 |
0 |
83% |
| gamdpy/simulation/Simulation.py |
Simulation.output |
1 |
0 |
0 |
100% |
| gamdpy/simulation/Simulation.py |
Simulation.JIT_and_test_kernel |
18 |
6 |
0 |
67% |
| gamdpy/simulation/Simulation.py |
Simulation.get_kernels_and_params |
9 |
3 |
0 |
67% |
| gamdpy/simulation/Simulation.py |
Simulation.update_params |
6 |
6 |
0 |
0% |
| gamdpy/simulation/Simulation.py |
Simulation.integrate_self |
2 |
0 |
0 |
100% |
| gamdpy/simulation/Simulation.py |
Simulation.make_integrator |
24 |
3 |
0 |
88% |
| gamdpy/simulation/Simulation.py |
Simulation.make_integrator.integrator |
15 |
15 |
0 |
0% |
| gamdpy/simulation/Simulation.py |
Simulation.run |
5 |
0 |
0 |
100% |
| gamdpy/simulation/Simulation.py |
Simulation.run_timeblocks |
42 |
0 |
0 |
100% |
| gamdpy/simulation/Simulation.py |
Simulation.status |
10 |
0 |
0 |
100% |
| gamdpy/simulation/Simulation.py |
Simulation.summary |
14 |
0 |
0 |
100% |
| gamdpy/simulation/Simulation.py |
Simulation.autotune_bruteforce |
73 |
73 |
0 |
0% |
| gamdpy/simulation/Simulation.py |
Simulation.autotune_scan_skin |
39 |
39 |
0 |
0% |
| gamdpy/simulation/Simulation.py |
Simulation.autotune |
81 |
81 |
0 |
0% |
| gamdpy/simulation/Simulation.py |
Simulation.autotune_tp |
28 |
28 |
0 |
0% |
| gamdpy/simulation/Simulation.py |
Simulation.autotune_skin |
18 |
18 |
0 |
0% |
| gamdpy/simulation/Simulation.py |
Simulation.scan_skin |
19 |
19 |
0 |
0% |
| gamdpy/simulation/Simulation.py |
(no function) |
30 |
0 |
0 |
100% |
| gamdpy/simulation/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| gamdpy/simulation/get_default_compute_flags.py |
get_default_compute_flags |
2 |
0 |
0 |
100% |
| gamdpy/simulation/get_default_compute_flags.py |
(no function) |
1 |
0 |
0 |
100% |
| gamdpy/simulation/get_default_compute_plan.py |
get_default_compute_plan |
42 |
5 |
0 |
88% |
| gamdpy/simulation/get_default_compute_plan.py |
(no function) |
7 |
0 |
0 |
100% |
| gamdpy/simulation/get_default_sim.py |
get_default_sim |
13 |
0 |
0 |
100% |
| gamdpy/simulation/get_default_sim.py |
(no function) |
1 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/__init__.py |
(no function) |
2 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.__init__ |
11 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_name |
1 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.copy_to_device |
1 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.copy_to_host |
4 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_volume_function |
3 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_volume_function.volume |
4 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_lengths |
1 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_volume |
1 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.scale |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_dist_sq_dr_function |
3 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_dist_sq_dr_function.dist_sq_dr_function |
11 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_dist_sq_function |
3 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_dist_sq_function.dist_sq_function |
13 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_apply_PBC |
3 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_apply_PBC.apply_PBC |
16 |
4 |
0 |
75% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_update_box_shift |
3 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_update_box_shift.update_box_shift |
10 |
10 |
0 |
0% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_dist_moved_exceeds_limit_function |
3 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_dist_moved_exceeds_limit_function.dist_moved_exceeds_limit_function |
23 |
1 |
0 |
96% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_loop_x_addition |
1 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_loop_x_shift_function |
3 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/lees_edwards.py |
LeesEdwards.get_loop_x_shift_function.loop_x_shift_function |
2 |
2 |
0 |
0% |
| gamdpy/simulation_boxes/lees_edwards.py |
(no function) |
21 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.__init__ |
4 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_name |
1 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.copy_to_device |
1 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.copy_to_host |
1 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_dist_sq_dr_function |
3 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_dist_sq_dr_function.dist_sq_dr_function |
7 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_dist_sq_function |
3 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_dist_sq_function.dist_sq_function |
7 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_apply_PBC |
3 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_apply_PBC.apply_PBC |
8 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_lengths |
1 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_volume |
1 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_volume_function |
3 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_volume_function.volume |
4 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.scale |
1 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_dist_moved_exceeds_limit_function |
3 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_dist_moved_exceeds_limit_function.dist_moved_exceeds_limit_function |
7 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_loop_x_addition |
1 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_loop_x_shift_function |
2 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/orthorhombic.py |
Orthorhombic.get_loop_x_shift_function.loop_x_shift_function |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/orthorhombic.py |
(no function) |
19 |
0 |
0 |
100% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox.make_device_copy |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox.get_name |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox.copy_to_device |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox.copy_to_host |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox.get_volume_function |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox.get_volume |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox.scale |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox.get_dist_sq_dr_function |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox.get_dist_sq_function |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox.get_apply_PBC |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox.get_dist_moved_exceeds_limit_function |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox.get_loop_x_addition |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
SimulationBox.get_loop_x_shift_function |
1 |
1 |
0 |
0% |
| gamdpy/simulation_boxes/simulationbox.py |
(no function) |
27 |
0 |
0 |
100% |
| gamdpy/tools/ConfigurationIO.py |
ConfigurationIO.__init__ |
1 |
1 |
0 |
0% |
| gamdpy/tools/ConfigurationIO.py |
ConfigurationIO.__save__ |
1 |
1 |
0 |
0% |
| gamdpy/tools/ConfigurationIO.py |
ConfigurationIO.__load__ |
1 |
1 |
0 |
0% |
| gamdpy/tools/ConfigurationIO.py |
ConfigurationIO.save_as_h5 |
1 |
1 |
0 |
0% |
| gamdpy/tools/ConfigurationIO.py |
ConfigurationIO.save_as_xyz |
1 |
1 |
0 |
0% |
| gamdpy/tools/ConfigurationIO.py |
ConfigurationIO.save_as_lammps |
1 |
1 |
0 |
0% |
| gamdpy/tools/ConfigurationIO.py |
ConfigurationIO.load_from_h5 |
1 |
1 |
0 |
0% |
| gamdpy/tools/ConfigurationIO.py |
ConfigurationIO.load_from_xyz |
1 |
1 |
0 |
0% |
| gamdpy/tools/ConfigurationIO.py |
ConfigurationIO.load_from_lammps |
1 |
1 |
0 |
0% |
| gamdpy/tools/ConfigurationIO.py |
(no function) |
15 |
0 |
0 |
100% |
| gamdpy/tools/Evaluator.py |
Evaluator.__init__ |
10 |
1 |
0 |
90% |
| gamdpy/tools/Evaluator.py |
Evaluator.make_evaluater_func |
11 |
2 |
0 |
82% |
| gamdpy/tools/Evaluator.py |
Evaluator.make_evaluater_func.evaluater |
3 |
3 |
0 |
0% |
| gamdpy/tools/Evaluator.py |
Evaluator.evaluate |
6 |
1 |
0 |
83% |
| gamdpy/tools/Evaluator.py |
(no function) |
10 |
0 |
0 |
100% |
| gamdpy/tools/TrajectoryIO.py |
TrajectoryIO.__init__ |
23 |
9 |
0 |
61% |
| gamdpy/tools/TrajectoryIO.py |
TrajectoryIO.get_h5 |
1 |
0 |
0 |
100% |
| gamdpy/tools/TrajectoryIO.py |
TrajectoryIO.load_h5 |
1 |
0 |
0 |
100% |
| gamdpy/tools/TrajectoryIO.py |
TrajectoryIO.load_rumd3 |
88 |
9 |
0 |
90% |
| gamdpy/tools/TrajectoryIO.py |
TrajectoryIO.save_h5 |
11 |
11 |
0 |
0% |
| gamdpy/tools/TrajectoryIO.py |
(no function) |
11 |
0 |
0 |
100% |
| gamdpy/tools/__init__.py |
(no function) |
5 |
0 |
0 |
100% |
| gamdpy/tools/calc_dynamics.py |
calc_dynamics_ |
9 |
0 |
0 |
100% |
| gamdpy/tools/calc_dynamics.py |
calc_dynamics |
35 |
1 |
0 |
97% |
| gamdpy/tools/calc_dynamics.py |
create_msd_plot |
7 |
7 |
0 |
0% |
| gamdpy/tools/calc_dynamics.py |
create_alpha2_plot |
7 |
7 |
0 |
0% |
| gamdpy/tools/calc_dynamics.py |
main |
28 |
28 |
0 |
0% |
| gamdpy/tools/calc_dynamics.py |
(no function) |
10 |
1 |
0 |
90% |
| gamdpy/tools/print_h5.py |
print_h5_structure |
8 |
1 |
0 |
88% |
| gamdpy/tools/print_h5.py |
print_h5_attributes |
9 |
0 |
0 |
100% |
| gamdpy/tools/print_h5.py |
(no function) |
3 |
0 |
0 |
100% |
| gamdpy/tools/save_configuration.py |
save_configuration |
6 |
1 |
0 |
83% |
| gamdpy/tools/save_configuration.py |
(no function) |
1 |
0 |
0 |
100% |
| gamdpy/visualization/__init__.py |
(no function) |
1 |
0 |
0 |
100% |
| gamdpy/visualization/k3d_.py |
k3d_Visualization.__init__ |
20 |
20 |
0 |
0% |
| gamdpy/visualization/k3d_.py |
k3d_Visualization.display |
1 |
1 |
0 |
0% |
| gamdpy/visualization/k3d_.py |
k3d_Visualization.update |
9 |
9 |
0 |
0% |
| gamdpy/visualization/k3d_.py |
k3d_Visualization.set_color_range |
9 |
9 |
0 |
0% |
| gamdpy/visualization/k3d_.py |
k3d_Visualization.display_player |
1 |
1 |
0 |
0% |
| gamdpy/visualization/k3d_.py |
(no function) |
8 |
0 |
0 |
100% |