LICENSE
README.md
pyproject.toml
src/SCGBinner/SCGBinner_version.py
src/SCGBinner/Split_contigs.py
src/SCGBinner/__init__.py
src/SCGBinner/cluster.py
src/SCGBinner/filter_small_bins.py
src/SCGBinner/fraggenescan
src/SCGBinner/get_augfeature.py
src/SCGBinner/get_final_result.py
src/SCGBinner/hmmsearch
src/SCGBinner/main.py
src/SCGBinner/marker_search.py
src/SCGBinner/markers.hmm
src/SCGBinner/run_scgbinner.sh
src/SCGBinner/simclr.py
src/SCGBinner/train_CLmodel.py
src/SCGBinner/utils.py
src/SCGBinner/wrapper.py
src/SCGBinner.egg-info/PKG-INFO
src/SCGBinner.egg-info/SOURCES.txt
src/SCGBinner.egg-info/dependency_links.txt
src/SCGBinner.egg-info/entry_points.txt
src/SCGBinner.egg-info/top_level.txt
src/SCGBinner/data_aug/__init__.py
src/SCGBinner/data_aug/gen_cov.py
src/SCGBinner/data_aug/gen_kmer.py
src/SCGBinner/data_aug/generate_augfasta_and_saveindex.py
src/SCGBinner/models/__init__.py
src/SCGBinner/models/mlp.py
src/SCGBinner/models/mlp2.py
src/SCGBinner/scripts/Filter_tooshort.py
src/SCGBinner/scripts/__init__.py
src/SCGBinner/scripts/gen_bins_from_tsv.py
src/SCGBinner/scripts/gen_cov_file.sh
src/SCGBinner/scripts/print_comment.py
src/SCGBinner/scripts/seq_io.py
src/SCGBinner/train/complete
src/SCGBinner/train/gene
src/SCGBinner/train/noncoding
src/SCGBinner/train/pwm
src/SCGBinner/train/rgene
src/SCGBinner/train/start
src/SCGBinner/train/start1
src/SCGBinner/train/stop
src/SCGBinner/train/stop1