pandas
pymupdf
metapub
requests
scispacy
spacy<3.8.0,>=3.0.0
beautifulsoup4
biopython
transformers
torch
openpyxl
click>=8.1

[dev]
build
bumpversion
coverage[toml]
pytest
pytest-cov
ruff
sphinx
sphinx_rtd_theme
sphinx-autoapi
myst_parser
jupyter
ipykernel

[docs]
sphinx
sphinx_rtd_theme
sphinx-autoapi
myst_parser

[publishing]
build
twine
wheel
