bioframe>=0.8.0
biopython>=1.87
matplotlib>=3.10.7
numpy>=2.3.5
pandas>=2.3.3
pyfaidx>=0.8.1.3
pysam>=0.23.3
reportlab>=4.4.10
scikit-learn>=1.7.2
scipy>=1.16.3
statsmodels>=0.14.6

[test]
pytest
pytest-cov
pytest-xdist
coverage[all]
hypothesis[numpy]
mypy
ruff
pip-audit
bandit[toml]
