.dockerignore
.gitignore
CLAUDE.MD
Dockerfile
LICENSE
README.md
gunicorn.conf.py
plan.md
pyproject.toml
requirements-dev.txt
requirements.txt
setup.py
.github/workflows/ci.yml
.github/workflows/release-docker.yml
docs/predicate_handling.md
gandalf/__init__.py
gandalf/annotate.py
gandalf/biolink.py
gandalf/compression.py
gandalf/config.py
gandalf/diagnostics.py
gandalf/enrichment.py
gandalf/graph.py
gandalf/heartbeat.py
gandalf/lmdb_store.py
gandalf/loader.py
gandalf/logging_config.py
gandalf/main.py
gandalf/models.py
gandalf/node_store.py
gandalf/normalize.py
gandalf/openapi-config.yaml
gandalf/openapi.py
gandalf/otel.py
gandalf/profiler.py
gandalf/query_planner.py
gandalf/request_validation.py
gandalf/server.py
gandalf/validation.py
gandalf/plugins/__init__.py
gandalf/plugins/enrichers.py
gandalf/plugins/information_content.py
gandalf/plugins/literature_cooccurrence_annotator.py
gandalf/plugins/max_node_degree.py
gandalf/plugins/traversal_metadata_store.py
gandalf/search/__init__.py
gandalf/search/attribute_constraints.py
gandalf/search/expanders.py
gandalf/search/gc_utils.py
gandalf/search/lookup.py
gandalf/search/node_filters.py
gandalf/search/path_arrays.py
gandalf/search/path_finder.py
gandalf/search/qualifiers.py
gandalf/search/query_edge.py
gandalf/search/reconstruct.py
gandalf/search/response_annotators.py
gandalf/sources/__init__.py
gandalf/sources/base.py
gandalf/sources/kgx_jsonl.py
gandalf/sources/mongo.py
gandalf/static/gandalf.png
gandalf_csr.egg-info/PKG-INFO
gandalf_csr.egg-info/SOURCES.txt
gandalf_csr.egg-info/dependency_links.txt
gandalf_csr.egg-info/entry_points.txt
gandalf_csr.egg-info/requires.txt
gandalf_csr.egg-info/top_level.txt
scripts/__init__.py
scripts/build_graph.py
scripts/build_graph_mongo.py
scripts/comparison.py
scripts/diagnose.py
scripts/gandalf_notebook.ipynb
scripts/plater_ingest.py
scripts/query_paths.py
scripts/retriever_request.txt
scripts/retriever_test.py
scripts/trapi_validation.py
scripts/benchmarks/benchmark_queries.json
scripts/benchmarks/pathfinder_queries.json
scripts/benchmarks/profile_query.py
scripts/benchmarks/run_benchmark.py
stress_tests/README.md
stress_tests/locustfile.py
stress_tests/requirements-stress.txt
tests/__init__.py
tests/conftest.py
tests/search_fixtures.py
tests/test_annotate_response.py
tests/test_attribute_constraints.py
tests/test_compression.py
tests/test_edge_node_references.py
tests/test_enrichment.py
tests/test_literature_cooccurrence_annotator.py
tests/test_loader.py
tests/test_lookup_basic.py
tests/test_lookup_response.py
tests/test_models.py
tests/test_node_binding_grouping.py
tests/test_node_degree.py
tests/test_node_filter_registry.py
tests/test_node_filters.py
tests/test_non_canonical_predicate_with_subclass.py
tests/test_normalize_query_graph.py
tests/test_otel_traceparent.py
tests/test_plugin_registration.py
tests/test_profiler.py
tests/test_property_store_batch.py
tests/test_qualifiers.py
tests/test_query_parameters.py
tests/test_related_to.py
tests/test_response_annotator_registry.py
tests/test_sanity.py
tests/test_set_interpretation.py
tests/test_sources.py
tests/test_subclass.py
tests/test_subclass_direct_edge.py
tests/test_subclass_inverse.py
tests/test_symmetric_predicates.py
tests/fixtures/edges.jsonl
tests/fixtures/nodes.jsonl