LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
src/napistu_torch/__init__.py
src/napistu_torch/__main__.py
src/napistu_torch/_cli.py
src/napistu_torch/configs.py
src/napistu_torch/constants.py
src/napistu_torch/napistu_data.py
src/napistu_torch/napistu_data_store.py
src/napistu_torch/vertex_tensor.py
src/napistu_torch.egg-info/PKG-INFO
src/napistu_torch.egg-info/SOURCES.txt
src/napistu_torch.egg-info/dependency_links.txt
src/napistu_torch.egg-info/entry_points.txt
src/napistu_torch.egg-info/requires.txt
src/napistu_torch.egg-info/top_level.txt
src/napistu_torch/data/__init__.py
src/napistu_torch/data/compare_napistu_data.py
src/napistu_torch/data/constants.py
src/napistu_torch/data/data_utils.py
src/napistu_torch/data/dataset.py
src/napistu_torch/evaluation/__init__.py
src/napistu_torch/evaluation/constants.py
src/napistu_torch/evaluation/edge_prediction.py
src/napistu_torch/evaluation/edge_weights.py
src/napistu_torch/evaluation/manager.py
src/napistu_torch/evaluation/model_comparison.py
src/napistu_torch/evaluation/pathways.py
src/napistu_torch/evaluation/relation_prediction.py
src/napistu_torch/foundation_models/__init__.py
src/napistu_torch/foundation_models/attention_patterns.py
src/napistu_torch/foundation_models/constants.py
src/napistu_torch/foundation_models/etl.py
src/napistu_torch/foundation_models/foundation_models.py
src/napistu_torch/foundation_models/gene_embeddings.py
src/napistu_torch/labels/__init__.py
src/napistu_torch/labels/apply.py
src/napistu_torch/labels/constants.py
src/napistu_torch/labels/create.py
src/napistu_torch/labels/labeling_manager.py
src/napistu_torch/lightning/__init__.py
src/napistu_torch/lightning/callbacks.py
src/napistu_torch/lightning/constants.py
src/napistu_torch/lightning/datamodule.py
src/napistu_torch/lightning/edge_batch_datamodule.py
src/napistu_torch/lightning/full_graph_datamodule.py
src/napistu_torch/lightning/tasks.py
src/napistu_torch/lightning/trainer.py
src/napistu_torch/lightning/workflows.py
src/napistu_torch/load/__init__.py
src/napistu_torch/load/artifacts.py
src/napistu_torch/load/checkpoints.py
src/napistu_torch/load/constants.py
src/napistu_torch/load/encoders.py
src/napistu_torch/load/encoding.py
src/napistu_torch/load/encoding_manager.py
src/napistu_torch/load/gcs.py
src/napistu_torch/load/napistu_graphs.py
src/napistu_torch/load/stratification.py
src/napistu_torch/ml/__init__.py
src/napistu_torch/ml/constants.py
src/napistu_torch/ml/hugging_face.py
src/napistu_torch/ml/losses.py
src/napistu_torch/ml/metrics.py
src/napistu_torch/ml/splitting.py
src/napistu_torch/ml/wandb.py
src/napistu_torch/models/__init__.py
src/napistu_torch/models/constants.py
src/napistu_torch/models/edge_encoder.py
src/napistu_torch/models/head_utils.py
src/napistu_torch/models/heads.py
src/napistu_torch/models/message_passing_encoder.py
src/napistu_torch/models/node2vec.py
src/napistu_torch/tasks/__init__.py
src/napistu_torch/tasks/base.py
src/napistu_torch/tasks/constants.py
src/napistu_torch/tasks/edge_prediction.py
src/napistu_torch/tasks/negative_sampler.py
src/napistu_torch/tasks/node_classification.py
src/napistu_torch/utils/__init__.py
src/napistu_torch/utils/base_utils.py
src/napistu_torch/utils/constants.py
src/napistu_torch/utils/environment_info.py
src/napistu_torch/utils/labeling_utils.py
src/napistu_torch/utils/napistu_utils.py
src/napistu_torch/utils/nd_utils.py
src/napistu_torch/utils/optional.py
src/napistu_torch/utils/pd_utils.py
src/napistu_torch/utils/statistics.py
src/napistu_torch/utils/table_utils.py
src/napistu_torch/utils/tensor_utils.py
src/napistu_torch/utils/torch_utils.py
src/napistu_torch/visualization/__init__.py
src/napistu_torch/visualization/advanced_metrics.py
src/napistu_torch/visualization/basic_metrics.py
src/napistu_torch/visualization/constants.py
src/napistu_torch/visualization/embeddings.py
src/napistu_torch/visualization/heatmaps.py