CHANGELOG.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
src/phytclust/__init__.py
src/phytclust/__main__.py
src/phytclust/exceptions.py
src/phytclust/validation.py
src/phytclust.egg-info/PKG-INFO
src/phytclust.egg-info/SOURCES.txt
src/phytclust.egg-info/dependency_links.txt
src/phytclust.egg-info/entry_points.txt
src/phytclust.egg-info/requires.txt
src/phytclust.egg-info/top_level.txt
src/phytclust/algo/__init__.py
src/phytclust/algo/bins.py
src/phytclust/algo/bootstrap_stability.py
src/phytclust/algo/core.py
src/phytclust/algo/dp.py
src/phytclust/algo/dp_polytomy.py
src/phytclust/algo/dp_utils.py
src/phytclust/algo/scoring.py
src/phytclust/assets/ascii_logo.txt
src/phytclust/assets/phytclust_logo_colour.png
src/phytclust/assets/phytclust_logo_colour_text_only.png
src/phytclust/assets/phytclust_text_only_colour.svg
src/phytclust/assets/small_logo.png
src/phytclust/cli/__init__.py
src/phytclust/cli/__main__.py
src/phytclust/cli/_cli.py
src/phytclust/config/__init__.py
src/phytclust/config/core.py
src/phytclust/config/outlier.py
src/phytclust/config/peak.py
src/phytclust/config/runtime.py
src/phytclust/gui/api.py
src/phytclust/io/__init__.py
src/phytclust/io/save.py
src/phytclust/metrics/__init__.py
src/phytclust/metrics/indices.py
src/phytclust/selection/__init__.py
src/phytclust/selection/representatives.py
src/phytclust/utils/__init__.py
src/phytclust/utils/tree.py
src/phytclust/viz/__init__.py
src/phytclust/viz/cluster.py
src/phytclust/viz/draw.py
src/phytclust/viz/palette.py
src/phytclust/viz/scores.py
tests/test_api.py
tests/test_bins.py
tests/test_cache.py
tests/test_cli.py
tests/test_metrics.py
tests/test_polytomy.py
tests/test_validation.py
tests/test_visualization.py