{#
  Single-sample chimerism report, PDF layout (issue #35). Shares every section
  with the HTML report through macros.html; the only differences are structural:
  the on-screen "how it works" disclosures are suppressed inline (show_help=False)
  and collected into a "Methods and notes" appendix at the end, so nothing is
  hidden in a printed document. Selected by `--pdf`; override via --template by
  dropping a pdf/report.html into your template directory.
#}
{% extends "base.html" %}
{% import "macros.html" as m %}
{% block body %}
{# Running header element: repeated at the top of every printed page (see
   pdf/styles.css @top-center). Removed from normal flow by `position: running`. #}
<div class="doc-running-header">{{ title }}</div>
{{ m.header(header_rows) }}

<section class="section headline">
<h2>Result</h2>
<div class="headline-grid">
<div class="figure-card verdict">
<div class="figure-label">QC verdict</div>
<div>{{ badge(analysis.qc_status, large=True) }}</div>
</div>
{% if "donors" in analysis %}
{% for d in analysis.donors %}
{{ m.figure_card("Donor " ~ loop.index ~ " fraction", d.donor_pct | pct_value, ci(d.ci_lo, d.ci_hi, as_pct=False)) }}
{% endfor %}
{{ m.figure_card("Combined donor", analysis.total_donor_pct | pct_value) }}
{{ m.figure_card("Host (recipient)", analysis.host_pct | pct_value) }}
{% else %}
{{ m.figure_card("Donor fraction", analysis.donor_pct | pct_value, ci(analysis.ci_lo, analysis.ci_hi, as_pct=False)) }}
{{ m.figure_card("Host (recipient)", analysis.host_pct | pct_value, ci(host_ci_lo, host_ci_hi, as_pct=False)) }}
{% endif %}
</div>
{% if "donors" not in analysis %}
<div class="sensitivity-line">Sample sensitivity (as a donor fraction): limit of blank {{ analysis.lob_pct | pct_value }}, limit of detection {{ analysis.lod_pct | pct_value }}.</div>
{% endif %}
</section>

{{ m.host_presence(host_presence.hp, host_presence.detected, show_help=False) }}
{{ m.qc_panel(qc, show_help=False) }}
{{ m.footer(version, params, citation, timestamp, show_run_command=False) }}

<section class="section methods-appendix">
<h2>Methods and notes</h2>
{{ m.help_fractions() }}
{{ m.help_host_presence() }}
{{ m.help_qc() }}
{{ m.run_command(params) }}
</section>
{% endblock %}