Index

A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X

A

abort_session() (gc3utils.commands.cmd_gsession method)
add() (gc3libs.core.Core method)
(gc3libs.core.Engine method)
(gc3libs.session.Session method)
(gc3libs.workflow.TaskCollection method)
add_params() (gc3libs.authentication.Auth method)
adjoin() (gc3libs.url.Url method)
after_main_loop() (gc3libs.cmdline.SessionBasedScript method)
API
append() (gc3libs.utils.History method)
Application (class in gc3libs)
application_name (gc3libs.Application attribute)
ApplicationDescriptionError
AppPotApplication (class in gc3libs.application.apppot)
Arc1Lrms (class in gc3libs.backends.arc1)
ARC_CACHE_TIME (gc3libs.Default attribute)
ARC_LOST_JOB_TIMEOUT (gc3libs.Default attribute)
ArcLrms (class in gc3libs.backends.arc0)
attach() (gc3libs.Task method)
(gc3libs.workflow.TaskCollection method)
Auth (class in gc3libs.authentication)
auth_factory (gc3libs.config.Configuration attribute)
authenticated() (gc3libs.backends.LRMS static method)
AuthError

B

backup() (in module gc3libs.utils)
basename_sans() (in module gc3libs.utils)
BatchSystem (class in gc3libs.backends.batch)
before_main_loop() (gc3libs.cmdline.SessionBasedScript method)
bsub() (gc3libs.Application method)

C

cache_for() (in module gc3libs.utils)
cancel_job() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
cat() (in module gc3libs.utils)
close() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
(gc3libs.core.Core method)
(gc3libs.core.Engine method)
cmd_gclean (class in gc3utils.commands)
cmd_gget (class in gc3utils.commands)
cmd_ginfo (class in gc3utils.commands)
cmd_gkill (class in gc3utils.commands)
cmd_gresub (class in gc3utils.commands)
cmd_gselect (class in gc3utils.commands)
cmd_gservers (class in gc3utils.commands)
cmd_gsession (class in gc3utils.commands)
cmd_gstat (class in gc3utils.commands)
cmd_gtail (class in gc3utils.commands)
cmdline() (gc3libs.Application method)
Command-line
Command-line option
compatible_resources() (gc3libs.Application method)
compute_nr_of_slots() (in module gc3libs.backends.sge)
Configuration (class in gc3libs.config)
ConfigurationError
configure_logger() (in module gc3libs)
copy() (gc3libs.utils.Struct method)
copy_recursively() (in module gc3libs.utils)
copyfile() (in module gc3libs.utils)
copytree() (in module gc3libs.utils)
Core
(class in gc3libs.core)
count() (in module gc3libs.utils)
count_jobs() (in module gc3libs.backends.pbs)
(in module gc3libs.backends.sge)
CPU Time

D

DataStagingError
Default (class in gc3libs)
defproperty() (in module gc3libs.utils)
delete_session() (gc3utils.commands.cmd_gsession method)
deploy_configuration_file() (in module gc3libs.utils)
destroy() (gc3libs.session.Session method)
detach() (gc3libs.Task method)
DetachedFromGridError
dirname() (in module gc3libs.utils)
DuplicateEntryError
Duration (class in gc3libs.quantity)

E

Engine (class in gc3libs.core)
Enum (class in gc3libs.utils)
Error
every_main_loop() (gc3libs.cmdline.SessionBasedScript method)
exitcode (gc3libs.Run attribute)
expansions() (gc3libs.template.Template method)
(in module gc3libs.template)

F

FatalError
fetch_output() (gc3libs.core.Core method)
(gc3libs.Task method)
(gc3libs.core.Engine method)
fetch_output_error() (gc3libs.Application method)
filter_by_iofile() (gc3utils.commands.cmd_gselect method)
filter_by_regexp() (gc3utils.commands.cmd_gselect method)
filter_by_state() (gc3utils.commands.cmd_gselect method)
filter_by_submission_date() (gc3utils.commands.cmd_gselect method)
first() (in module gc3libs.utils)
flush() (gc3libs.session.Session method)
forget() (gc3libs.session.Session method)
format_message() (gc3libs.utils.History method)
free() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.Task method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
(gc3libs.core.Core method)
(gc3libs.core.Engine method)
from_template() (in module gc3libs.utils)

G

GamessApplication (class in gc3libs.application.gamess)
GamessAppPotApplication (class in gc3libs.application.gamess)
gc3libs (module)
gc3libs.application (module)
gc3libs.application.apppot (module)
gc3libs.application.gamess (module)
gc3libs.application.rosetta (module)
gc3libs.authentication (module)
gc3libs.authentication.grid (module)
gc3libs.authentication.ssh (module)
gc3libs.backends (module)
gc3libs.backends.arc0 (module)
gc3libs.backends.arc1 (module)
gc3libs.backends.batch (module)
gc3libs.backends.lsf (module)
gc3libs.backends.pbs (module)
gc3libs.backends.sge (module)
gc3libs.backends.shellcmd (module)
gc3libs.backends.transport (module)
gc3libs.cmdline (module)
gc3libs.config (module)
gc3libs.core (module)
gc3libs.exceptions (module)
gc3libs.persistence (module)
gc3libs.quantity (module)
gc3libs.Resource (module)
gc3libs.session (module)
gc3libs.template (module)
gc3libs.url (module)
gc3libs.utils (module)
gc3libs.workflow (module)
gc3utils (module)
gc3utils.commands (module)
gc3utils.frontend (module)
GC3UtilsScript (class in gc3libs.cmdline)
generic_filename_mapping() (in module gc3libs.backends.batch)
get() (gc3libs.authentication.Auth method)
get_jobid_from_submit_output() (gc3libs.backends.batch.BatchSystem method)
get_resource_status() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.lsf.LsfLrms method)
(gc3libs.backends.pbs.PbsLrms method)
(gc3libs.backends.sge.SgeLrms method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
get_resources() (gc3libs.core.Core method)
get_results() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
getattr_nested() (in module gc3libs.utils)

H

History (class in gc3libs.utils)

I

ifelse() (in module gc3libs.utils)
in_state() (gc3libs.Run method)
info (gc3libs.Run attribute)
InputFileError
InternalError
InvalidArgument
InvalidOperation
InvalidResourceName
InvalidType
InvalidUsage
InvalidValue
irange() (in module gc3libs.utils)

J

Job

K

kill() (gc3libs.core.Core method)
(gc3libs.Task method)
(gc3libs.core.Engine method)
(gc3libs.workflow.ParallelTaskCollection method)
(gc3libs.workflow.SequentialTaskCollection method)

L

last() (gc3libs.utils.History method)
list_ids() (gc3libs.session.Session method)
list_jobs() (gc3utils.commands.cmd_gsession method)
list_names() (gc3libs.session.Session method)
load() (gc3libs.config.Configuration method)
(gc3libs.session.Session method)
LoadError
lock() (in module gc3libs.utils)
Log (in module gc3libs.utils)
LRMS (class in gc3libs.backends)
LsfLrms (class in gc3libs.backends.lsf)

M

main() (in module gc3utils.frontend)
make_auth() (gc3libs.config.Configuration method)
make_directory_path() (gc3libs.cmdline.SessionBasedScript method)
make_resources() (gc3libs.config.Configuration method)
make_task_controller() (gc3libs.cmdline.SessionBasedScript method)
Memory (class in gc3libs.quantity)
merge_file() (gc3libs.config.Configuration method)
mkdir() (in module gc3libs.utils)
mkdir_with_backup() (in module gc3libs.utils)

N

new() (gc3libs.Task method)
new_tasks() (gc3libs.cmdline.SessionBasedScript method)
next() (gc3libs.workflow.SequentialTaskCollection method)
NoConfigurationFile
NoneAuth (class in gc3libs.authentication)
nonnegative_int() (in module gc3libs.cmdline)
NoResources

O

OutputNotAvailableError

P

ParallelTaskCollection (class in gc3libs.workflow)
parse_qhost_f() (in module gc3libs.backends.sge)
parse_qstat_f() (in module gc3libs.backends.sge)
PbsLrms (class in gc3libs.backends.pbs)
peek() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.Task method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
(gc3libs.core.Core method)
(gc3libs.core.Engine method)
(gc3libs.workflow.TaskCollection method)
Persistent
PlusInfinity (class in gc3libs.utils)
positive_int() (in module gc3libs.cmdline)
pre_run() (gc3libs.cmdline.GC3UtilsScript method)
(gc3libs.cmdline.SessionBasedScript method)
prettyprint() (in module gc3libs.utils)
print_summary_table() (gc3libs.cmdline.SessionBasedScript method)
print_tasks_table() (gc3libs.cmdline.SessionBasedScript method)
process_args() (gc3libs.cmdline.SessionBasedScript method)
progress() (gc3libs.core.Engine method)
(gc3libs.Task method)
(gc3libs.workflow.ParallelTaskCollection method)
(gc3libs.workflow.SequentialTaskCollection method)
progressive_number() (in module gc3libs.utils)
PROXY_VALIDITY_THRESHOLD (gc3libs.Default attribute)
Python Enhancement Proposals
PEP 8

Q

qsub_pbs() (gc3libs.Application method)
qsub_sge() (gc3libs.Application method)
Quantity (class in gc3libs.quantity)

R

rank_resources() (gc3libs.Application method)
read_contents() (in module gc3libs.utils)
RecoverableDataStagingError
RecoverableError
remove() (gc3libs.core.Core method)
(gc3libs.core.Engine method)
(gc3libs.session.Session method)
(gc3libs.workflow.TaskCollection method)
Resource
(class in gc3libs.Resource)
retry() (gc3libs.workflow.RetryableTask method)
RetryableTask (class in gc3libs.workflow)
returncode (gc3libs.Run attribute)
RosettaApplication (class in gc3libs.application.rosetta)
RosettaDockingApplication (class in gc3libs.application.rosetta)
Run (class in gc3libs)
Run.Arch (class in gc3libs)
running() (gc3libs.Task method)

S

safe_repr() (in module gc3libs.utils)
same_docstring_as() (in module gc3libs.utils)
samefile() (in module gc3libs.utils)
save() (gc3libs.session.Session method)
save_all() (gc3libs.session.Session method)
sbatch() (gc3libs.Application method)
select_resource() (gc3libs.core.Core method)
SequentialTaskCollection (class in gc3libs.workflow)
Session
(class in gc3libs.session)
SessionBasedScript (class in gc3libs.cmdline)
set_end_timestamp() (gc3libs.session.Session method)
set_start_timestamp() (gc3libs.session.Session method)
setup() (gc3libs.cmdline.GC3UtilsScript method)
(gc3libs.cmdline.SessionBasedScript method)
(gc3utils.commands.cmd_gservers method)
setup_args() (gc3libs.cmdline.GC3UtilsScript method)
(gc3libs.cmdline.SessionBasedScript method)
(gc3utils.commands.cmd_gservers method)
(gc3utils.commands.cmd_gtail method)
SgeLrms (class in gc3libs.backends.sge)
ShellcmdLrms (class in gc3libs.backends.shellcmd)
shellexit_to_returncode() (gc3libs.Run static method)
show_log() (gc3utils.commands.cmd_gsession method)
signal (gc3libs.Run attribute)
Singleton (class in gc3libs.utils)
StagedTaskCollection (class in gc3libs.workflow)
State
state (gc3libs.Run attribute)
stats() (gc3libs.core.Engine method)
(gc3libs.workflow.TaskCollection method)
stopped() (gc3libs.Task method)
string_to_boolean() (in module gc3libs.utils)
stripped() (in module gc3libs.utils)
Struct (class in gc3libs.utils)
submit() (gc3libs.core.Core method)
(gc3libs.Task method)
(gc3libs.core.Engine method)
(gc3libs.workflow.ParallelTaskCollection method)
(gc3libs.workflow.SequentialTaskCollection method)
submit_error() (gc3libs.Application method)
submit_job() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
submitted() (gc3libs.Task method)
substitute() (gc3libs.template.Template method)

T

Task (class in gc3libs)
TaskCollection (class in gc3libs.workflow)
TaskError
Template (class in gc3libs.template)
terminated() (gc3libs.application.gamess.GamessApplication method)
(gc3libs.Task method)
(gc3libs.application.rosetta.RosettaApplication method)
(gc3libs.workflow.TaskCollection method)
terminating() (gc3libs.Task method)
test_file() (in module gc3libs.utils)
to_bytes() (in module gc3libs.utils)
to_timedelta() (gc3libs.quantity.Duration method)

U

UnexpectedStateError
uniq() (in module gc3libs.utils)
unknown() (gc3libs.Task method)
UnknownJob
UnknownJobState
unlock() (in module gc3libs.utils)
UnrecoverableDataStagingError
UnrecoverableError
update_job_state() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)
(gc3libs.core.Core method)
(gc3libs.core.Engine method)
update_job_state_error() (gc3libs.Application method)
update_resources() (gc3libs.core.Core method)
update_state() (gc3libs.Task method)
(gc3libs.workflow.ParallelTaskCollection method)
(gc3libs.workflow.RetryableTask method)
(gc3libs.workflow.SequentialTaskCollection method)
(gc3libs.workflow.TaskCollection method)
Url (class in gc3libs.url)
UrlKeyDict (class in gc3libs.url)
UrlValueDict (class in gc3libs.url)

V

validate_data() (gc3libs.backends.arc0.ArcLrms method)
(gc3libs.backends.LRMS method)
(gc3libs.backends.arc1.Arc1Lrms method)
(gc3libs.backends.batch.BatchSystem method)
(gc3libs.backends.shellcmd.ShellcmdLrms method)

W

wait() (gc3libs.Task method)
(gc3libs.workflow.TaskCollection method)
Walltime
write_contents() (in module gc3libs.utils)

X

xrsl() (gc3libs.Application method)