LICENSE
MANIFEST.in
README.md
pyproject.toml
bioleach.egg-info/PKG-INFO
bioleach.egg-info/SOURCES.txt
bioleach.egg-info/dependency_links.txt
bioleach.egg-info/entry_points.txt
bioleach.egg-info/requires.txt
bioleach.egg-info/top_level.txt
src/bioleach/__init__.py
src/bioleach/assemble_contigs.py
src/bioleach/bioleach.py
src/bioleach/bioproject.py
src/bioleach/database.py
src/bioleach/download.py
src/bioleach/env.py
src/bioleach/gzip_agnostic_open.py
src/bioleach/predict.py
src/bioleach/remove_contaminants.py
src/bioleach/trim.py
src/bioleach/version.py
src/bioleach/data/bioleach_abstract.txt
src/bioleach/data/bioleach_organisms.csv
src/bioleach/data/bioleach_organisms/Acidithiobacillales_thiooxidans_53_22.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Acidithiobacillus_ferrivorans_57_58.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Acidithiobacillus_ferrooxidans-related_58_37.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Acidithiobacillus_ferrovorans-related_58_37.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Acidithiobacillus_thiooxidans_53_1337.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Acidthiobacillus_ferrooxidans_59_545.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Ferroplasma_acidarmanus_36_84.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Ferroplasma_acidarmanus_Type2_43_352.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Ferroplasma_acidarmanus_related_37_242.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Gplasma_37_19.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Leptospirillum_ferrodiazotrophum_59_239.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Plasmid_51_263.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Plasmid_53_253.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Plasmid_57_162.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Plasmid_Acidithiobacillus_50_48.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Plasmid_Acidithiobacillus_55_30.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Plasmid_Acidithiobacillus_56_509.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Plasmid_Acidithiobacillus_56_860.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Plasmid_Acidithiobacillus_58_640.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Plasmid_Acidithiobacillus_59_32.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Plasmid_Acidithiobacillus_60_86.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Plasmid_Alphaproteobacteria_64_937.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Plasmid_Leptospirillum_56_137.contigs.fa.gz
src/bioleach/data/bioleach_organisms/Rhodospirillales_66_495.contigs.fa.gz
test/test_contig.py
test/test_database.py