QC Report speccheck {{ version }}

{%- else %}

QC Report

{%- endif %}

Summary of assembled sample QC results, criteria checks, and software-specific diagnostics.

{%- for kpi in dataset_kpis %} {% if interactive_tables and kpi.filter %} {% else %}

{{ kpi.label }} {{ kpi.value }}

{% endif %} {%- endfor %}

{% if run_context %}

{{ item.label }}: {{ item.value }}

{% endif %}

Jump to

Action first

Review queue

{{ review_status_counts.NEEDS_REVIEW }} of {{ review_status_counts.ALL }} samples require review. Select a row for its key metrics, tool statuses and failed checks.

{% if interactive_tables %}

{% endif %} {{ sample_review_table }}

Top review reasons

{% if run_alerts %}

{{ alert.count }} {{ alert.reason }}

{% else %}

No recurring warning or failure reasons were detected.

{% endif %}

How to use this report

Start with FAIL and WARN samples in the review queue.
Open a sample row to inspect its metrics and failed checks.
Use tool diagnostics only when a reason needs investigation.

CohortCohort metrics Four compact distribution summaries

Diagnostics

Tool diagnostics

Open a tool only when a sample-level result needs investigation. Opening one tool closes the others.

Export and audit

Data and provenance

Download concise CSV Download full CSV

Methods Software and citations Tools represented in this report

Full detail Full merged table Open only when you need every parser, metadata, and provenance column.

Full parser, metadata, and provenance columns are preserved here. For large runs, use the filter box and pagination controls rather than scrolling the whole table at once.

{% if interactive_tables %} {% endif %} {% if interactive_tables %} {% endif %}