LICENSE
README.md
pyproject.toml
src/automated_pipeline.py
src/detect_pattern.py
src/qc_viz.py
src/quantification.py
src/fungiform/__init__.py
src/fungiform/_batch.py
src/fungiform/_io.py
src/fungiform/_logging.py
src/fungiform/_state.py
src/fungiform/_widget.py
src/fungiform/napari.yaml
src/fungiform/_tasks/__init__.py
src/fungiform/_tasks/_base.py
src/fungiform/_tasks/alignment.py
src/fungiform/_tasks/quantification.py
src/fungiform/_tasks/segmentation.py
src/fungiform/templates/head_template.tiff
src/fungiform/templates/perfect_template.tiff
src/fungiform/templates/stem_template.tiff
src/napari_fungiform.egg-info/PKG-INFO
src/napari_fungiform.egg-info/SOURCES.txt
src/napari_fungiform.egg-info/dependency_links.txt
src/napari_fungiform.egg-info/entry_points.txt
src/napari_fungiform.egg-info/requires.txt
src/napari_fungiform.egg-info/top_level.txt
tests/test_napari_widget.py
tests/test_pipeline_smoke.py
tests/test_qc_viz.py
tests/test_quantification.py
tests/test_smoke.py