CITATION.cff
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
doc/conf.py
doc/index.rst
doc/make.bat
doc/_static/36mer.qual.heatmap.png
doc/_static/36mer.qual.plot.png
doc/_static/Aug_26.geneBodyCoverage.curves.png
doc/_static/Aug_26.geneBodyCoverage.heatMap.png
doc/_static/FPKM_RPKM.png
doc/_static/NVC_plot.png
doc/_static/R2_qual.qual_heatmap.png
doc/_static/RIN_medTIN_vs_RNA_frag.png
doc/_static/RelativeError.png
doc/_static/TIN_vs_transcript_fragmentSize.png
doc/_static/clipping_good.png
doc/_static/deletion_profile.png
doc/_static/duplicate.png
doc/_static/geneBody_coverage.png
doc/_static/geneBody_workflow.png
doc/_static/inner_distance.png
doc/_static/inner_distance_concept.png
doc/_static/insertion_profile.png
doc/_static/junction.png
doc/_static/junction_interact.png
doc/_static/junction_saturation.png
doc/_static/logo.png
doc/_static/mTIN_vs_RIN.png
doc/_static/mismatch_profile.png
doc/_static/out.clipping_profile.R1.png
doc/_static/out.clipping_profile.R2.png
doc/_static/out.deletion_profile.png
doc/_static/out.insertion_profile.R1.png
doc/_static/out.insertion_profile.R2.png
doc/_static/output.CB_edits_heatmap.png
doc/_static/output.UMI_edits_heatmap.png
doc/_static/output_I1.logo.mean_centered.png
doc/_static/output_I1.logo.png
doc/_static/output_R1.logo.mean_centered.png
doc/_static/output_R1.logo.png
doc/_static/read_gc.png
doc/_static/saturation.png
doc/_static/saturation_eg.png
scripts/FPKM-UQ.py
scripts/FPKM_count.py
scripts/RNA_fragment_size.py
scripts/RPKM_saturation.py
scripts/bam2fq.py
scripts/bam2wig.py
scripts/bam_stat.py
scripts/clipping_profile.py
scripts/deletion_profile.py
scripts/divide_bam.py
scripts/geneBody_coverage.py
scripts/geneBody_coverage2.py
scripts/infer_experiment.py
scripts/inner_distance.py
scripts/insertion_profile.py
scripts/junction_annotation.py
scripts/junction_saturation.py
scripts/mismatch_profile.py
scripts/normalize_bigwig.py
scripts/overlay_bigwig.py
scripts/read_GC.py
scripts/read_NVC.py
scripts/read_distribution.py
scripts/read_duplication.py
scripts/read_hexamer.py
scripts/read_quality.py
scripts/sc_bamStat.py
scripts/sc_editMatrix.py
scripts/sc_seqLogo.py
scripts/sc_seqQual.py
scripts/split_bam.py
scripts/split_paired_bam.py
scripts/tin.py
src/psyco_full.py
src/RSeQC.egg-info/PKG-INFO
src/RSeQC.egg-info/SOURCES.txt
src/RSeQC.egg-info/dependency_links.txt
src/RSeQC.egg-info/requires.txt
src/RSeQC.egg-info/top_level.txt
src/qcmodule/BED.py
src/qcmodule/FrameKmer.py
src/qcmodule/SAM.py
src/qcmodule/__init__.py
src/qcmodule/annoGene.py
src/qcmodule/bam_cigar.py
src/qcmodule/changePoint.py
src/qcmodule/cigar.py
src/qcmodule/dotProduct.py
src/qcmodule/fasta.py
src/qcmodule/fastq.py
src/qcmodule/getBamFiles.py
src/qcmodule/heatmap.py
src/qcmodule/ireader.py
src/qcmodule/mystat.py
src/qcmodule/orf.py
src/qcmodule/quantile.py
src/qcmodule/scbam.py
src/qcmodule/twoList.py
src/qcmodule/wiggle.py