LICENSE
README.md
pyproject.toml
src/timelapsed_hrpqct.egg-info/PKG-INFO
src/timelapsed_hrpqct.egg-info/SOURCES.txt
src/timelapsed_hrpqct.egg-info/dependency_links.txt
src/timelapsed_hrpqct.egg-info/entry_points.txt
src/timelapsed_hrpqct.egg-info/requires.txt
src/timelapsed_hrpqct.egg-info/top_level.txt
src/timelapsedhrpqct/__init__.py
src/timelapsedhrpqct/cli.py
src/timelapsedhrpqct/analysis/__init__.py
src/timelapsedhrpqct/analysis/remodelling.py
src/timelapsedhrpqct/config/__init__.py
src/timelapsedhrpqct/config/loader.py
src/timelapsedhrpqct/config/models.py
src/timelapsedhrpqct/config/profiles.py
src/timelapsedhrpqct/configs/defaults.yml
src/timelapsedhrpqct/configs/profiles/eth-uofc-compatibility.yml
src/timelapsedhrpqct/configs/profiles/eth-uofc.yml
src/timelapsedhrpqct/configs/profiles/multistack.yml
src/timelapsedhrpqct/configs/profiles/ped-fx.yml
src/timelapsedhrpqct/configs/profiles/standard.yml
src/timelapsedhrpqct/configs/profiles/xct1-standard.yml
src/timelapsedhrpqct/dataset/__init__.py
src/timelapsedhrpqct/dataset/artifacts.py
src/timelapsedhrpqct/dataset/derivative_paths.py
src/timelapsedhrpqct/dataset/discovery.py
src/timelapsedhrpqct/dataset/filename_decoder.py
src/timelapsedhrpqct/dataset/layout.py
src/timelapsedhrpqct/dataset/models.py
src/timelapsedhrpqct/dataset/transform_registry.py
src/timelapsedhrpqct/io/__init__.py
src/timelapsedhrpqct/io/aim.py
src/timelapsedhrpqct/io/image.py
src/timelapsedhrpqct/io/metadata.py
src/timelapsedhrpqct/processing/__init__.py
src/timelapsedhrpqct/processing/analysis_io.py
src/timelapsedhrpqct/processing/contour_generation.py
src/timelapsedhrpqct/processing/filling.py
src/timelapsedhrpqct/processing/filling_io.py
src/timelapsedhrpqct/processing/fused_outputs.py
src/timelapsedhrpqct/processing/fusion.py
src/timelapsedhrpqct/processing/import_outputs.py
src/timelapsedhrpqct/processing/ipl_resampling.py
src/timelapsedhrpqct/processing/laplace_hamming.py
src/timelapsedhrpqct/processing/masks.py
src/timelapsedhrpqct/processing/qc.py
src/timelapsedhrpqct/processing/registration.py
src/timelapsedhrpqct/processing/resampling.py
src/timelapsedhrpqct/processing/scanco_transforms.py
src/timelapsedhrpqct/processing/segmentation.py
src/timelapsedhrpqct/processing/stack_correction.py
src/timelapsedhrpqct/processing/stacks.py
src/timelapsedhrpqct/processing/superstack.py
src/timelapsedhrpqct/processing/timelapse_outputs.py
src/timelapsedhrpqct/processing/transform_apply.py
src/timelapsedhrpqct/processing/transform_chain.py
src/timelapsedhrpqct/qc/__init__.py
src/timelapsedhrpqct/qc/figures.py
src/timelapsedhrpqct/qc/reporting.py
src/timelapsedhrpqct/tools/__init__.py
src/timelapsedhrpqct/tools/legacy_migration.py
src/timelapsedhrpqct/utils/__init__.py
src/timelapsedhrpqct/utils/benchmark.py
src/timelapsedhrpqct/utils/logging.py
src/timelapsedhrpqct/utils/paths.py
src/timelapsedhrpqct/utils/session_ids.py
src/timelapsedhrpqct/utils/sitk_helpers.py
src/timelapsedhrpqct/workflows/__init__.py
src/timelapsedhrpqct/workflows/analysis.py
src/timelapsedhrpqct/workflows/apply_transforms.py
src/timelapsedhrpqct/workflows/filling.py
src/timelapsedhrpqct/workflows/generate_masks.py
src/timelapsedhrpqct/workflows/import_aim.py
src/timelapsedhrpqct/workflows/multistack_correction.py
src/timelapsedhrpqct/workflows/timelapse_registration.py
tests/test_aim_io.py
tests/test_aim_write.py
tests/test_analysis_workflow.py
tests/test_artifact_portability.py
tests/test_cli_incremental_run.py
tests/test_config_examples.py
tests/test_config_profiles.py
tests/test_contour_generation.py
tests/test_derivative_paths.py
tests/test_discovery.py
tests/test_filling_algorithms.py
tests/test_filling_io.py
tests/test_fused_outputs.py
tests/test_generate_data.py
tests/test_generate_masks_workflow.py
tests/test_import_alignment.py
tests/test_import_outputs.py
tests/test_io_image_helpers.py
tests/test_io_metadata_helpers.py
tests/test_ipl_resampling.py
tests/test_legacy_migration.py
tests/test_mask_selection.py
tests/test_processing_helpers.py
tests/test_qc_processing.py
tests/test_registration_parameter_map.py
tests/test_registration_qc_processing.py
tests/test_scanco_transforms.py
tests/test_slicer_toolbox_roadmap.py
tests/test_stack_correction_components.py
tests/test_superstack_processing.py
tests/test_timelapse_outputs.py
tests/test_timelapse_registration_masks.py
tests/test_transform_chain.py
tests/test_transform_registry.py
tests/test_workflow_filling_light.py
tests/test_workflow_pipeline.py