.gitignore
Bock2011_2951_xZGgUFHBDISQMdco_dl_mask.tif
LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
test2.ipynb
tox.ini
.github/workflows/python-publish.yml
.vscode/settings.json
notebooks/Functions.md
notebooks/tutorial.md
source/convert_label.png
source/convert_label_example.png
source/image-1.png
source/image-10.png
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source/image-8.png
source/image-9.png
source/image.png
source/inference_gui.png
src/emcfsys/__init__.py
src/emcfsys/_reader.py
src/emcfsys/_sample_data.py
src/emcfsys/_version.py
src/emcfsys/_widget.py
src/emcfsys/_writer.py
src/emcfsys/napari.yaml
src/emcfsys.egg-info/PKG-INFO
src/emcfsys.egg-info/SOURCES.txt
src/emcfsys.egg-info/dependency_links.txt
src/emcfsys.egg-info/entry_points.txt
src/emcfsys.egg-info/requires.txt
src/emcfsys.egg-info/top_level.txt
src/emcfsys/EMCellFiner/hat/models/hat_arch.py
src/emcfsys/EMCellFiner/hat/models/hat_model.py
src/emcfsys/EMCellFiner/hat/models/img_utils.py
src/emcfsys/EMCellFiner/hat/models/inference_hat.py
src/emcfsys/EMCellFound/inference.py
src/emcfsys/EMCellFound/train.py
src/emcfsys/EMCellFound/datasets/segmentation2D.py
src/emcfsys/EMCellFound/metrics/metrics.py
src/emcfsys/EMCellFound/models/BackboneWrapper.py
src/emcfsys/EMCellFound/models/DeepLabv3Plus.py
src/emcfsys/EMCellFound/models/EMCellFoundViT.py
src/emcfsys/EMCellFound/models/PSPNet.py
src/emcfsys/EMCellFound/models/UNet.py
src/emcfsys/EMCellFound/models/UperNet.py
src/emcfsys/EMCellFound/models/backbone_registry.py
src/emcfsys/EMCellFound/models/model_factory.py
src/emcfsys/EMCellFound/transforms/augmentations.py
src/emcfsys/EMCellFound/transforms/transforms.py
src/emcfsys/EMCellFound/utils/checkpoint.py
src/emcfsys/PhenotypeAnalysis/__init__.py
src/emcfsys/PhenotypeAnalysis/functions.py
src/emcfsys/dataset_transform/label2semanticseg.py
src/emcfsys/test_imgs/test_img.tif
tests/__init__.py
tests/test_reader.py
tests/test_sample_data.py
tests/test_widget.py
tests/test_writer.py