LICENSE
README.md
pyproject.toml
phytreon/__init__.py
phytreon/datasets.py
phytreon/scene.py
phytreon/treeops.py
phytreon.egg-info/PKG-INFO
phytreon.egg-info/SOURCES.txt
phytreon.egg-info/dependency_links.txt
phytreon.egg-info/requires.txt
phytreon.egg-info/top_level.txt
phytreon/comparative/__init__.py
phytreon/comparative/ace.py
phytreon/comparative/stochastic_mapping.py
phytreon/core/__init__.py
phytreon/core/io.py
phytreon/core/tree.py
phytreon/infer/__init__.py
phytreon/infer/_search.py
phytreon/infer/aa_models.py
phytreon/infer/align.py
phytreon/infer/bootstrap.py
phytreon/infer/distance.py
phytreon/infer/expression.py
phytreon/infer/lineage.py
phytreon/infer/matrix.py
phytreon/infer/ml.py
phytreon/infer/ml_native.py
phytreon/infer/parsimony.py
phytreon/infer/pipeline.py
phytreon/infer/trim.py
phytreon/layout/__init__.py
phytreon/layout/base.py
phytreon/layout/circular.py
phytreon/layout/rectangular.py
phytreon/layout/unrooted.py
phytreon/plot/__init__.py
phytreon/plot/backends.py
phytreon/plot/densi.py
phytreon/plot/elements.py
phytreon/plot/figure.py
phytreon/plot/palettes.py
phytreon/plot/tangle.py
tests/test_expression.py
tests/test_lineage.py
tests/test_pipeline.py
tests/test_protein_ml.py
tests/test_smoke.py
tests/test_tangle.py
tests/test_treeplots.py