LICENSE
MANIFEST.in
README.md
setup.py
spycone/BioNetwork.py
spycone/DataSet.py
spycone/__config__.py
spycone/__init__.py
spycone/clustering.py
spycone/connectivity.py
spycone/go_terms.py
spycone/iso.py
spycone/preprocess.py
spycone/run_domino.py
spycone/setup.py
spycone/splicingfactor.py
spycone/visualize.py
spycone.egg-info/PKG-INFO
spycone.egg-info/SOURCES.txt
spycone.egg-info/dependency_links.txt
spycone.egg-info/requires.txt
spycone.egg-info/top_level.txt
spycone/DOMINO/__init__.py
spycone/DOMINO/setup.py
spycone/DOMINO/src/__init__.py
spycone/DOMINO/src/constants.py
spycone/DOMINO/src/runner.py
spycone/DOMINO/src/core/__init__.py
spycone/DOMINO/src/core/domino.py
spycone/DOMINO/src/core/network_builder.py
spycone/DOMINO/src/core/preprocess_slices.py
spycone/DOMINO/src/data/__init__.py
spycone/DOMINO/src/pcst_fast_py/__init__.py
spycone/DOMINO/src/pcst_fast_py/setup.py
spycone/DOMINO/src/utils/__init__.py
spycone/DOMINO/src/utils/ensembl2gene_symbol.py
spycone/DOMINO/src/utils/graph_influence_linear_th.py
spycone/DOMINO/src/utils/scripts.py
spycone/DOMINO/src/utils/visualize_modules.py
spycone/_NEASE/__init__.py
spycone/_NEASE/setup.py
spycone/_NEASE/nease/__init__.py
spycone/_NEASE/nease/functions.py
spycone/_NEASE/nease/load.py
spycone/_NEASE/nease/nease.py
spycone/_NEASE/nease/process.py
spycone/_NEASE/nease/data/database/Human
spycone/_NEASE/nease/data/network/PPI_Human.pkl
spycone/_NEASE/nease/data/network/graph_human.pkl
spycone/_NEASE/nease/data/pathways/pathways_human
spycone/_clustering/__init__.py
spycone/_clustering/build_cluster.py
spycone/_clustering/clusterobj.py
spycone/_clustering/inverseshortestpath.py
spycone/_clustering/kmedoids.py
spycone/_clustering/setup.py
spycone/_clustering/similarities.py
spycone/_clustering/skclara.py
spycone/_feature/__init__.py
spycone/_feature/get_features.py
spycone/_feature/_connectivity/__init__.py
spycone/_feature/_connectivity/setup.py
spycone/_fitness/__init__.py
spycone/_fitness/fitness_score.py
spycone/_fitness/scaler.py
spycone/_preprocessing/__init__.py
spycone/_preprocessing/_discretization.py
spycone/_prototype/__init__.py
spycone/_prototype/prototype_builder.py
spycone/_shuffle/__init__.py
spycone/_shuffle/setup.py
spycone/_shuffle/shuffle.py
spycone/_util_stat/__init__.py
spycone/_util_stat/compute_pvalues.py
spycone/_util_stat/daviesbouldinindex.py
spycone/_util_stat/dunnsindex.py
spycone/_util_stat/multipletesting.py
spycone/_util_stat/pq_val.py
spycone/_util_stat/setup.py
spycone/_util_stat/validity.py
spycone/_visualization/__init__.py
spycone/_visualization/plotting.py
spycone/_visualization/plotting_clusters.py
spycone/data/entrez2symb.pkl
spycone/data/motif_obj.pkl
spycone/data/motif_pssm.pkl
spycone/data/motif_pwm.pkl
spycone/data/motif_thres.pkl
spycone/data/network/._9606_ddi_weighted_biogrid_entrez.tab
spycone/data/network/10090_biogrid_entrez.tab
spycone/data/network/10090_trans_pfam.pkl
spycone/data/network/10090_ver_trans_pfam.pkl
spycone/data/network/9606_biogrid_entrez.tab
spycone/data/network/9606_biogrid_entrez.tab.pkl
spycone/data/network/9606_ddi_weighted_biogrid_entrez.tab
spycone/data/network/9606_trans_pfam.pkl
spycone/data/network/9606_ver_trans_pfam.pkl
spycone/data/network/exons_9606_ensembl.pkl
spycone/data/network/i2d.2_9.entrez.MOUSE.tab
spycone/data/network/i2d.2_9.entrez.MOUSE.tab.pkl
spycone/data/network/mouse_PPI_DDI.graphml
spycone/data/network/network_human_PPIDDI.graphml
spycone/data/network/network_human_PPIDDI.tab
spycone/data/network/network_human_PPIDDI.tab.pkl
spycone/data/network/network_mouse_PPIDDI.graphml
spycone/data/network/network_mouse_PPIDDI.tab
spycone/data/network/splicingfactors.txt
spycone/data/network/.ipynb_checkpoints/10090_biogrid_entrez-checkpoint.tab
spycone/data/network/.ipynb_checkpoints/9606_biogrid_entrez-checkpoint.tab
spycone/data/network/.ipynb_checkpoints/networkBIOGRID-ALL-3.5.171-checkpoint.tab2