__pycache__/
*.py[cod]
*.egg-info/
.eggs/
build/
dist/
.venv/
venv/
.env

.pytest_cache/
.mypy_cache/
.ruff_cache/
htmlcov/
.coverage

.DS_Store
.idea/
.vscode/

# data + outputs
*.h5ad
*.h5
*.loom
*.zarr/
scellrun_out/
*.png
*.pdf
!templates/**/*.png

# claude
.claude/settings.local.json
