.gitignore
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.readthedocs.yaml
CHANGELOG.md
LICENSE
MANIFEST.in
README.md
RELEASE.md
pyproject.toml
.github/workflows/linting.yml
.github/workflows/pipeline_testing.yml
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.github/workflows/publish.yml
.github/workflows/testing.yml
brainsets/__init__.py
brainsets/config.py
brainsets/core.py
brainsets/descriptions.py
brainsets/pipeline.py
brainsets/runner.py
brainsets.egg-info/PKG-INFO
brainsets.egg-info/SOURCES.txt
brainsets.egg-info/dependency_links.txt
brainsets.egg-info/entry_points.txt
brainsets.egg-info/requires.txt
brainsets.egg-info/top_level.txt
brainsets/_cli/__init__.py
brainsets/_cli/cli.py
brainsets/_cli/cli_completion.py
brainsets/_cli/cli_config.py
brainsets/_cli/cli_list.py
brainsets/_cli/cli_prepare.py
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brainsets/datasets/AllenVisualCodingOphys2016.py
brainsets/datasets/ChurchlandShenoyNeural2012.py
brainsets/datasets/FlintSlutzkyAccurate2012.py
brainsets/datasets/KempSleepEDF2013.py
brainsets/datasets/KlinzingSleepDS005555.py
brainsets/datasets/KochiVisualNamingDS006914.py
brainsets/datasets/Neuroprobe2025.py
brainsets/datasets/OdohertySabesNonhuman2017.py
brainsets/datasets/OpenNeuroDataset.py
brainsets/datasets/PeiPandarinathNLB2021.py
brainsets/datasets/PerichMillerPopulation2018.py
brainsets/datasets/ShiraziHBNR1DS005505.py
brainsets/datasets/VollanMoserAlternating2025.py
brainsets/datasets/__init__.py
brainsets/datasets/_utils.py
brainsets/processing/__init__.py
brainsets/processing/signal.py
brainsets/taxonomy/__init__.py
brainsets/utils/__init__.py
brainsets/utils/bids_utils.py
brainsets/utils/dandi_utils.py
brainsets/utils/misc_utils.py
brainsets/utils/mne_utils.py
brainsets/utils/s3_utils.py
brainsets/utils/split.py
brainsets/utils/openneuro/__init__.py
brainsets/utils/openneuro/openneuro_s3.py
brainsets/utils/openneuro/pipeline.py
brainsets_pipelines/allen_visual_coding_ophys_2016/pipeline.py
brainsets_pipelines/allen_visual_coding_ophys_2016/session_ids.txt
brainsets_pipelines/allen_visual_coding_ophys_2016/split.py
brainsets_pipelines/churchland_shenoy_neural_2012/pipeline.py
brainsets_pipelines/flint_slutzky_accurate_2012/pipeline.py
brainsets_pipelines/kemp_sleep_edf_2013/pipeline.py
brainsets_pipelines/klinzing_sleep_ds005555/pipeline.py
brainsets_pipelines/kochi_visualnaming_ds006914/pipeline.py
brainsets_pipelines/neuroprobe_2025/pipeline.py
brainsets_pipelines/odoherty_sabes_nonhuman_2017/pipeline.py
brainsets_pipelines/pei_pandarinath_nlb_2021/README.md
brainsets_pipelines/pei_pandarinath_nlb_2021/pipeline.py
brainsets_pipelines/perich_miller_population_2018/pipeline.py
brainsets_pipelines/shirazi_hbnr1_ds005505/pipeline.py
brainsets_pipelines/vollan_moser_alternating_2025/pipeline.py
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docs/README.md
docs/make.bat
docs/requirements.txt
docs/source/api_reference.py
docs/source/conf.py
docs/source/index.rst
docs/source/_static/brainsets_logo.png
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docs/source/_static/css/custom.css
docs/source/_templates/base.rst
docs/source/_templates/dataset.rst
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docs/source/api/module.rst.template
docs/source/cli/commands.rst
docs/source/guides/create_pipeline.rst
docs/source/guides/index.rst
docs/source/guides/installation.rst
docs/source/guides/neuroprobe.rst
docs/source/guides/openneuro_pipeline.rst
docs/source/guides/prepare_data.rst
docs/source/guides/using_existing_data.rst
docs/source/js/scripts/api-search.js
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tests/test_bids_utils.py
tests/test_cli.py
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tests/test_mne_utils.py
tests/test_neuroprobe2025_dataset.py
tests/test_neuroprobe2025_pipeline.py
tests/test_openneuro_dataset.py
tests/test_openneuro_pipeline.py
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tests/test_vollan_pipeline.py
tests/util.py