DAY-EC activated.
DAY-EC activated.
=== now ===
2026-05-30T23:27:33Z
=== fsx ===
Filesystem              Type    Size  Used Avail Use% Mounted on
10.0.1.96@tcp:/d4tzvb4v lustre  8.8T  8.1T  707G  93% /fsx
tmpfs                   tmpfs   199G  8.0K  199G   1% /dev/shm
/dev/root               ext4    408G   42G  367G  11% /
=== slurm ===
4661|i192|CONFIGURING|2:09|1|i192-dy-all-1|bclconvert_metrics_multiqc_exports-bclconvert_metrics_multiqc_exports
=== bclconvert output sizes ===
4.4T	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert
84M	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001
84M	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002
78M	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L003
84M	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004
84M	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L005
84M	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L006
84M	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L007
78M	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L008
50K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001
50K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002
50K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L003
50K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004
50K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L005
50K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L006
50K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L007
50K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L008
=== lane done files ===
2026-05-30T23:07:15.0000000000Z /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/bclconvert.done
2026-05-30T23:09:46.0000000000Z /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L007/bclconvert.done
2026-05-30T23:11:57.0000000000Z /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L006/bclconvert.done
2026-05-30T23:13:57.0000000000Z /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/bclconvert.done
2026-05-30T23:19:39.0000000000Z /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004/bclconvert.done
2026-05-30T23:20:29.0000000000Z /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L008/bclconvert.done
2026-05-30T23:23:58.0000000000Z /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L005/bclconvert.done
2026-05-30T23:25:18.0000000000Z /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L003/bclconvert.done
=== recent lane log tails ===
--- run_bclconvert.L001.log ---
INFO:    Using cached SIF image
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings:
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is disabled
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/SampleSheet.csv --bcl-only-lane 1 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 8
SW compressors: 48
SW decompressors: 16
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L001 finished: 2026-05-30T23:07:05+00:00
--- run_bclconvert.L002.log ---
INFO:    Using cached SIF image
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings:
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is disabled
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/SampleSheet.csv --bcl-only-lane 2 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 8
SW compressors: 48
SW decompressors: 16
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L002 finished: 2026-05-30T23:13:48+00:00
--- run_bclconvert.L003.log ---
INFO:    Using cached SIF image
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings:
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is disabled
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L003 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L003/SampleSheet.csv --bcl-only-lane 3 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 8
SW compressors: 48
SW decompressors: 16
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L003 finished: 2026-05-30T23:25:13+00:00
--- run_bclconvert.L004.log ---
INFO:    Using cached SIF image
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings:
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is disabled
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004/SampleSheet.csv --bcl-only-lane 4 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 8
SW compressors: 48
SW decompressors: 16
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L004 finished: 2026-05-30T23:19:37+00:00
--- run_bclconvert.L005.log ---
INFO:    Using cached SIF image
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings:
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is disabled
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L005 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L005/SampleSheet.csv --bcl-only-lane 5 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 8
SW compressors: 48
SW decompressors: 16
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L005 finished: 2026-05-30T23:23:49+00:00
--- run_bclconvert.L006.log ---
INFO:    Using cached SIF image
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings:
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is disabled
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L006 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L006/SampleSheet.csv --bcl-only-lane 6 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 8
SW compressors: 48
SW decompressors: 16
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L006 finished: 2026-05-30T23:11:53+00:00
--- run_bclconvert.L007.log ---
INFO:    Using cached SIF image
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings:
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is disabled
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L007 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L007/SampleSheet.csv --bcl-only-lane 7 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 8
SW compressors: 48
SW decompressors: 16
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L007 finished: 2026-05-30T23:09:43+00:00
--- run_bclconvert.L008.log ---
INFO:    Using cached SIF image
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings:
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is disabled
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L008 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L008/SampleSheet.csv --bcl-only-lane 8 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 8
SW compressors: 48
SW decompressors: 16
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L008 finished: 2026-05-30T23:20:24+00:00
