DAY-EC activated.
DAY-EC activated.
__PATHS_START__
remote_root=/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis
bcl_dir=/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert
/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert
/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks
/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs
/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L003
/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports
/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L003
/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs
/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tables
/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs
/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003
/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports
/fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003
__PATHS_END__
__BENCHMARKS_START__
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/merge_bclconvert_tile_shards.L003.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
1.1261	0:00:01	84.78	105.49	80.21	80.38	2.91	0.68	40.35	0.53	i192mem-dy-all-1	10.0.1.10	192	0.4707	m7i.metal-48xl	us-west-2d	3.148900	1	0.000005
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0001_tiles0001-0098.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
792.5007	0:13:12	137855.96	164378.05	137874.56	137879.32	56949.64	0.18	453.79	3596.46	i192mem-dy-all-2	10.0.1.236	192	4.5381	m7i.metal-48xl	us-west-2d	3.148900	48	0.173299
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0002_tiles0099-0196.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
854.5991	0:14:14	107495.67	134276.21	107514.99	107519.68	64773.18	0.18	437.57	3739.50	i192mem-dy-all-1	10.0.1.10	192	4.3757	m7i.metal-48xl	us-west-2d	3.148900	48	0.186878
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0003_tiles0197-0294.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
886.9210	0:14:46	170695.40	217993.41	170659.32	170664.04	74574.55	0.18	459.56	4076.06	i192mem-dy-all-1	10.0.1.10	192	4.5957	m7i.metal-48xl	us-west-2d	3.148900	48	0.193946
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0004_tiles0295-0392.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
763.4943	0:12:43	127649.92	156027.12	127574.06	127578.78	50220.62	0.18	477.30	3644.28	i192mem-dy-all-2	10.0.1.236	192	4.7732	m7i.metal-48xl	us-west-2d	3.148900	48	0.166956
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0005_tiles0393-0490.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
738.8768	0:12:18	188210.71	288771.73	188235.64	188240.37	61461.61	0.18	512.58	3787.62	i192mem-dy-all-1	10.0.1.10	192	5.1262	m7i.metal-48xl	us-west-2d	3.148900	48	0.161573
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0006_tiles0491-0588.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
852.8938	0:14:12	152595.26	195720.85	152618.09	152622.77	57398.07	0.18	424.69	3622.39	i192mem-dy-all-2	10.0.1.236	192	4.2472	m7i.metal-48xl	us-west-2d	3.148900	48	0.186505
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0007_tiles0589-0686.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
791.9369	0:13:11	139371.56	164037.36	139390.57	139395.28	62249.43	0.19	472.71	3743.63	i192mem-dy-all-1	10.0.1.10	192	4.7272	m7i.metal-48xl	us-west-2d	3.148900	48	0.173176
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0008_tiles0687-0784.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
753.9500	0:12:33	169112.72	231753.07	169127.76	169132.45	50279.23	0.18	493.31	3719.26	i192mem-dy-all-2	10.0.1.236	192	4.9330	m7i.metal-48xl	us-west-2d	3.148900	48	0.164869
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.lane_fastqs_ready.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
0.0159	0:00:00	3.25	7.80	0.34	0.46	0.00	0.00	0.00	0.00	ip-10-0-0-225	54.148.239.185	32	0.0000	r7i.8xlarge	us-west-2d	0.954600	1	0.000000
__BENCHMARKS_END__
__LOG_EXTRACTS_START__
__LOG_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0001_tiles0001-0098.log
bcl-convert Version 00.000.000.4.0.3
bcl-convert command: singularity exec --bind /fsx:/fsx docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0001_tiles0001-0098 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0001_tiles0001-0098/SampleSheet.csv --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 2 --bcl-num-compression-threads 8 --bcl-num-decompression-threads 8 --shared-thread-odirect-output true --output-legacy-stats true --num-unknown-barcodes-reported 1000 --tiles s_3_1101+s_3_1102+s_3_1103+s_3_1104+s_3_1105+s_3_1106+s_3_1107+s_3_1108+s_3_1109+s_3_1110+s_3_1111+s_3_1112+s_3_1113+s_3_1114+s_3_1115+s_3_1116+s_3_1117+s_3_1118+s_3_1119+s_3_1120+s_3_1121+s_3_1122+s_3_1123+s_3_1124+s_3_1125+s_3_1126+s_3_1127+s_3_1128+s_3_1129+s_3_1130+s_3_1131+s_3_1132+s_3_1133+s_3_1134+s_3_1135+s_3_1136+s_3_1137+s_3_1138+s_3_1139+s_3_1140+s_3_1141+s_3_1142+s_3_1143+s_3_1144+s_3_1145+s_3_1146+s_3_1147+s_3_1148+s_3_1149+s_3_1150+s_3_1151+s_3_1152+s_3_1153+s_3_1154+s_3_1155+s_3_1156+s_3_1157+s_3_1158+s_3_1159+s_3_1160+s_3_1161+s_3_1162+s_3_1163+s_3_1164+s_3_1165+s_3_1166+s_3_1167+s_3_1168+s_3_1169+s_3_1170+s_3_1171+s_3_1172+s_3_1173+s_3_1174+s_3_1175+s_3_1176+s_3_1177+s_3_1178+s_3_1179+s_3_1180+s_3_1181+s_3_1182+s_3_1183+s_3_1184+s_3_1185+s_3_1186+s_3_1187+s_3_1188+s_3_1189+s_3_1190+s_3_1191+s_3_1192+s_3_1193+s_3_1194+s_3_1195+s_3_1196+s_3_1197+s_3_1198 -f
WARNING: skipping lane 1 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 2 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 4 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 5 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 6 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 7 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 8 because RunInfo.xml file lists no tiles for it
  SoftwareVersion = 4.0.3
WARNING: shared-thread-linux-native-asio output could have low performance or hang if output directory is on a distributed file system
bcl-convert Version 00.000.000.4.0.3
__LOG_TAIL__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0001_tiles0001-0098.log
prepared_lane_samplesheet lane=3 settings={"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"} out=results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0001_tiles0001-0098/SampleSheet.csv
run_bclconvert_lane L003 started: 2026-06-02T11:20:33+00:00
host: i192mem-dy-all-2
threads: 48
TMPDIR: /dev/shm
bcl_input_directory: /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4
output_directory: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0001_tiles0001-0098
sample_sheet: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0001_tiles0001-0098/SampleSheet.csv
bcl_only_lane: 3
tile_regex: s_3_1101+s_3_1102+s_3_1103+s_3_1104+s_3_1105+s_3_1106+s_3_1107+s_3_1108+s_3_1109+s_3_1110+s_3_1111+s_3_1112+s_3_1113+s_3_1114+s_3_1115+s_3_1116+s_3_1117+s_3_1118+s_3_1119+s_3_1120+s_3_1121+s_3_1122+s_3_1123+s_3_1124+s_3_1125+s_3_1126+s_3_1127+s_3_1128+s_3_1129+s_3_1130+s_3_1131+s_3_1132+s_3_1133+s_3_1134+s_3_1135+s_3_1136+s_3_1137+s_3_1138+s_3_1139+s_3_1140+s_3_1141+s_3_1142+s_3_1143+s_3_1144+s_3_1145+s_3_1146+s_3_1147+s_3_1148+s_3_1149+s_3_1150+s_3_1151+s_3_1152+s_3_1153+s_3_1154+s_3_1155+s_3_1156+s_3_1157+s_3_1158+s_3_1159+s_3_1160+s_3_1161+s_3_1162+s_3_1163+s_3_1164+s_3_1165+s_3_1166+s_3_1167+s_3_1168+s_3_1169+s_3_1170+s_3_1171+s_3_1172+s_3_1173+s_3_1174+s_3_1175+s_3_1176+s_3_1177+s_3_1178+s_3_1179+s_3_1180+s_3_1181+s_3_1182+s_3_1183+s_3_1184+s_3_1185+s_3_1186+s_3_1187+s_3_1188+s_3_1189+s_3_1190+s_3_1191+s_3_1192+s_3_1193+s_3_1194+s_3_1195+s_3_1196+s_3_1197+s_3_1198
sample_sheet_settings_json: {"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"}
sample_sheet_settings_by_lane_json: {}
output_legacy_stats: true
num_unknown_barcodes_reported: 1000
48
Filesystem                Size  Used Avail Use% Mounted on
tmpfs                     605G     0  605G   0% /dev/shm
10.0.1.248@tcp:/3vbzxb4v  6.6T  1.4T  5.2T  22% /fsx
10.0.1.248@tcp:/3vbzxb4v  6.6T  1.4T  5.2T  22% /fsx
/usr/bin/singularity
singularity_bind_args: --bind /fsx:/fsx
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc. 
bcl_num_parallel_tiles: 16
bcl_num_conversion_threads: 2
bcl_num_compression_threads: 8
bcl_num_decompression_threads: 8
bcl_cpu_heavy_threads: 48
bcl-convert command: singularity exec --bind /fsx:/fsx docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0001_tiles0001-0098 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0001_tiles0001-0098/SampleSheet.csv --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 2 --bcl-num-compression-threads 8 --bcl-num-decompression-threads 8 --shared-thread-odirect-output true --output-legacy-stats true --num-unknown-barcodes-reported 1000 --tiles s_3_1101+s_3_1102+s_3_1103+s_3_1104+s_3_1105+s_3_1106+s_3_1107+s_3_1108+s_3_1109+s_3_1110+s_3_1111+s_3_1112+s_3_1113+s_3_1114+s_3_1115+s_3_1116+s_3_1117+s_3_1118+s_3_1119+s_3_1120+s_3_1121+s_3_1122+s_3_1123+s_3_1124+s_3_1125+s_3_1126+s_3_1127+s_3_1128+s_3_1129+s_3_1130+s_3_1131+s_3_1132+s_3_1133+s_3_1134+s_3_1135+s_3_1136+s_3_1137+s_3_1138+s_3_1139+s_3_1140+s_3_1141+s_3_1142+s_3_1143+s_3_1144+s_3_1145+s_3_1146+s_3_1147+s_3_1148+s_3_1149+s_3_1150+s_3_1151+s_3_1152+s_3_1153+s_3_1154+s_3_1155+s_3_1156+s_3_1157+s_3_1158+s_3_1159+s_3_1160+s_3_1161+s_3_1162+s_3_1163+s_3_1164+s_3_1165+s_3_1166+s_3_1167+s_3_1168+s_3_1169+s_3_1170+s_3_1171+s_3_1172+s_3_1173+s_3_1174+s_3_1175+s_3_1176+s_3_1177+s_3_1178+s_3_1179+s_3_1180+s_3_1181+s_3_1182+s_3_1183+s_3_1184+s_3_1185+s_3_1186+s_3_1187+s_3_1188+s_3_1189+s_3_1190+s_3_1191+s_3_1192+s_3_1193+s_3_1194+s_3_1195+s_3_1196+s_3_1197+s_3_1198 -f
INFO:    Using cached SIF image
WARNING: skipping lane 1 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 2 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 4 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 5 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 6 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 7 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 8 because RunInfo.xml file lists no tiles for it
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings: 
  BarcodeMismatchesIndex1 = 0
  BarcodeMismatchesIndex2 = 0
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is enabled
WARNING: shared-thread-linux-native-asio output could have low performance or hang if output directory is on a distributed file system
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0001_tiles0001-0098 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0001_tiles0001-0098/SampleSheet.csv --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 2 --bcl-num-compression-threads 8 --bcl-num-decompression-threads 8 --shared-thread-odirect-output true --output-legacy-stats true --num-unknown-barcodes-reported 1000 --tiles s_3_1101+s_3_1102+s_3_1103+s_3_1104+s_3_1105+s_3_1106+s_3_1107+s_3_1108+s_3_1109+s_3_1110+s_3_1111+s_3_1112+s_3_1113+s_3_1114+s_3_1115+s_3_1116+s_3_1117+s_3_1118+s_3_1119+s_3_1120+s_3_1121+s_3_1122+s_3_1123+s_3_1124+s_3_1125+s_3_1126+s_3_1127+s_3_1128+s_3_1129+s_3_1130+s_3_1131+s_3_1132+s_3_1133+s_3_1134+s_3_1135+s_3_1136+s_3_1137+s_3_1138+s_3_1139+s_3_1140+s_3_1141+s_3_1142+s_3_1143+s_3_1144+s_3_1145+s_3_1146+s_3_1147+s_3_1148+s_3_1149+s_3_1150+s_3_1151+s_3_1152+s_3_1153+s_3_1154+s_3_1155+s_3_1156+s_3_1157+s_3_1158+s_3_1159+s_3_1160+s_3_1161+s_3_1162+s_3_1163+s_3_1164+s_3_1165+s_3_1166+s_3_1167+s_3_1168+s_3_1169+s_3_1170+s_3_1171+s_3_1172+s_3_1173+s_3_1174+s_3_1175+s_3_1176+s_3_1177+s_3_1178+s_3_1179+s_3_1180+s_3_1181+s_3_1182+s_3_1183+s_3_1184+s_3_1185+s_3_1186+s_3_1187+s_3_1188+s_3_1189+s_3_1190+s_3_1191+s_3_1192+s_3_1193+s_3_1194+s_3_1195+s_3_1196+s_3_1197+s_3_1198 -f 
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 2
SW compressors: 8
SW decompressors: 8
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L003 finished: 2026-06-02T11:33:46+00:00
__LOG_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0002_tiles0099-0196.log
bcl-convert Version 00.000.000.4.0.3
bcl-convert command: singularity exec --bind /fsx:/fsx docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0002_tiles0099-0196 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0002_tiles0099-0196/SampleSheet.csv --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 2 --bcl-num-compression-threads 8 --bcl-num-decompression-threads 8 --shared-thread-odirect-output true --output-legacy-stats true --num-unknown-barcodes-reported 1000 --tiles s_3_1201+s_3_1202+s_3_1203+s_3_1204+s_3_1205+s_3_1206+s_3_1207+s_3_1208+s_3_1209+s_3_1210+s_3_1211+s_3_1212+s_3_1213+s_3_1214+s_3_1215+s_3_1216+s_3_1217+s_3_1218+s_3_1219+s_3_1220+s_3_1221+s_3_1222+s_3_1223+s_3_1224+s_3_1225+s_3_1226+s_3_1227+s_3_1228+s_3_1229+s_3_1230+s_3_1231+s_3_1232+s_3_1233+s_3_1234+s_3_1235+s_3_1236+s_3_1237+s_3_1238+s_3_1239+s_3_1240+s_3_1241+s_3_1242+s_3_1243+s_3_1244+s_3_1245+s_3_1246+s_3_1247+s_3_1248+s_3_1249+s_3_1250+s_3_1251+s_3_1252+s_3_1253+s_3_1254+s_3_1255+s_3_1256+s_3_1257+s_3_1258+s_3_1259+s_3_1260+s_3_1261+s_3_1262+s_3_1263+s_3_1264+s_3_1265+s_3_1266+s_3_1267+s_3_1268+s_3_1269+s_3_1270+s_3_1271+s_3_1272+s_3_1273+s_3_1274+s_3_1275+s_3_1276+s_3_1277+s_3_1278+s_3_1279+s_3_1280+s_3_1281+s_3_1282+s_3_1283+s_3_1284+s_3_1285+s_3_1286+s_3_1287+s_3_1288+s_3_1289+s_3_1290+s_3_1291+s_3_1292+s_3_1293+s_3_1294+s_3_1295+s_3_1296+s_3_1297+s_3_1298 -f
WARNING: skipping lane 1 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 2 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 4 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 5 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 6 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 7 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 8 because RunInfo.xml file lists no tiles for it
  SoftwareVersion = 4.0.3
WARNING: shared-thread-linux-native-asio output could have low performance or hang if output directory is on a distributed file system
bcl-convert Version 00.000.000.4.0.3
__LOG_TAIL__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0002_tiles0099-0196.log
prepared_lane_samplesheet lane=3 settings={"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"} out=results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0002_tiles0099-0196/SampleSheet.csv
run_bclconvert_lane L003 started: 2026-06-02T11:20:33+00:00
host: i192mem-dy-all-1
threads: 48
TMPDIR: /dev/shm
bcl_input_directory: /fsx/analysis_results/ubuntu/bcl25b_l003_shard008_cpu_tuned_odirect_on_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4
output_directory: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0002_tiles0099-0196
sample_sheet: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0002_tiles0099-0196/SampleSheet.csv
bcl_only_lane: 3
tile_regex: s_3_1201+s_3_1202+s_3_1203+s_3_1204+s_3_1205+s_3_1206+s_3_1207+s_3_1208+s_3_1209+s_3_1210+s_3_1211+s_3_1212+s_3_1213+s_3_1214+s_3_1215+s_3_1216+s_3_1217+s_3_1218+s_3_1219+s_3_1220+s_3_1221+s_3_1222+s_3_1223+s_3_1224+s_3_1225+s_3_1226+s_3_1227+s_3_1228+s_3_1229+s_3_1230+s_3_1231+s_3_1232+s_3_1233+s_3_1234+s_3_1235+s_3_1236+s_3_1237+s_3_1238+s_3_1239+s_3_1240+s_3_1241+s_3_1242+s_3_1243+s_3_1244+s_3_1245+s_3_1246+s_3_1247+s_3_1248+s_3_1249+s_3_1250+s_3_1251+s_3_1252+s_3_1253+s_3_1254+s_3_1255+s_3_1256+s_3_1257+s_3_1258+s_3_1259+s_3_1260+s_3_1261+s_3_1262+s_3_1263+s_3_1264+s_3_1265+s_3_1266+s_3_1267+s_3_1268+s_3_1269+s_3_1270+s_3_1271+s_3_1272+s_3_1273+s_3_1274+s_3_1275+s_3_1276+s_3_1277+s_3_1278+s_3_1279+s_3_1280+s_3_1281+s_3_1282+s_3_1283+s_3_1284+s_3_1285+s_3_1286+s_3_1287+s_3_1288+s_3_1289+s_3_1290+s_3_1291+s_3_1292+s_3_1293+s_3_1294+s_3_1295+s_3_1296+s_3_1297+s_3_1298
sample_sheet_settings_json: {"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"}
sample_sheet_settings_by_lane_json: {}
output_legacy_stats: true
num_unknown_barcodes_reported: 1000
48
Filesystem                Size  Used Avail Use% Mounted on
tmpfs                     605G     0  605G   0% /dev/shm
10.0.1.248@tcp:/3vbzxb4v  6.6T  1.4T  5.2T  22% /fsx
10.0.1.248@tcp:/3vbzxb4v  6.6T  1.4T  5.2T  22% /fsx
/usr/bin/singularity
singularity_bind_args: --bind /fsx:/fsx
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc. 
bcl_num_parallel_tiles: 16
bcl_num_conversion_threads: 2
bcl_num_compression_threads: 8
bcl_num_decompression_threads: 8
bcl_cpu_heavy_threads: 48
bcl-convert command: singularity exec --bind /fsx:/fsx dock--output truncated--