DAY-EC activated.
COMMAND_ID=e8e28ae7-017d-44df-b1b0-3a3e7dadaa30
DAY-EC activated.
DAY-EC activated.
timestamp_utc	2026-06-03T06:40:39Z
base	/fsx/analysis_results/dyec0602bcl/bcl_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z
workset	/fsx/analysis_results/dyec0602bcl/bcl_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z/daylily-omics-analysis
run_id	fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z
dest	/fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z
git_head	3a3837a

== config bclconvert block ==
bootstrap_bclconvert: true

bclconvert:
  run_dir: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4
  sample_sheet: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/SampleSheet.csv
  output_root: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4
  run_id: fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z

  partition: i192bigmem
  constraint: ""
  threads: 192
  mem_mb: 1200000

  tmpdir: /dev/shm/dayoa_bclconvert_tmp
  scratch_output_root: /dev/shm/dayoa_bclconvert
  scratch_available_bytes_min: 650000000000

  parallel_tiles: 24
  conversion_threads: 4
  compression_threads: 64
  decompression_threads: 32

  tile_shard_level: 6
  tile_shard_lanes: "3"
  tile_shard_threads: 192
  tile_shard_mem_mb: 1200000
  tile_parallel_tiles: 24
  tile_conversion_threads: 4
  tile_compression_threads: 64
  tile_decompression_threads: 32

  merge_lane_fastqs: false
  merge_tile_fastqs: false
  shared_thread_odirect_output: false
  fastq_gzip_compression_level: 1
  output_legacy_stats: true
  num_unknown_barcodes_reported: 1000
  strict_mode: false
  first_tile_only: false
  sampleproject_subdirectories: false
  keep_undetermined_fastqs: true

== samples head ==
SAMPLEID	SAMPLESOURCE	SAMPLECLASS	BIOLOGICAL_SEX	CONCORDANCE_CONTROL_PATH	IS_POSITIVE_CONTROL	IS_NEGATIVE_CONTROL	SAMPLE_TYPE	TUM_NRM_SAMPLEID_MATCH	EXTERNAL_SAMPLE_ID	N_X	N_Y	TRUTH_DATA_DIR
HG001-a	blood	research	unknown	na	false	false	blood	na	HG001-a	na	na	na
HG001-b	blood	research	unknown	na	false	false	blood	na	HG001-b	na	na	na
HG001-c	blood	research	unknown	na	false	false	blood	na	HG001-c	na	na	na
HG002-a	blood	research	unknown	na	false	false	blood	na	HG002-a	na	na	na
HG002-b	blood	research	unknown	na	false	false	blood	na	HG002-b	na	na	na
HG002-c	blood	research	unknown	na	false	false	blood	na	HG002-c	na	na	na
HG003-a	blood	research	unknown	na	false	false	blood	na	HG003-a	na	na	na

== destination ==
drwxr-xr-x 2 ubuntu ubuntu 1024 Jun  3 06:40 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix_20260603T0642Z

== status ==
?? config/bclconvert_l003_6shard_i192bigmem_devshm_emptydirfix.yaml

STDERR:
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Updating files: 100% (1272/1272), done.

