DAY-EC activated.
DAY-EC activated.
.lane_fastqs_ready.log
    jobid: 2
    benchmark: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_b
clconvert_l003_8tile_tilesmoke_odirect_on_scratch_20260603T080931Z/benchmarks/ru
n_bclconvert.lane_fastqs_ready.bench.tsv
    reason: Missing output files: /fsx/run_dir_mounts/20260514_LH01106_0009_B23T
VLGLT4/fasts_from_bclconvert_l003_8tile_tilesmoke_odirect_on_scratch_20260603T08
0931Z/logs/bclconvert.done; Input files updated by another job: /fsx/run_dir_mou
nts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_8tile_tilesmoke_
odirect_on_scratch_20260603T080931Z/lane_reports/L003/bclconvert.done, /fsx/run_
dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_8tile_til
esmoke_odirect_on_scratch_20260603T080931Z/logs/validated.ok, /fsx/run_dir_mount
s/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_8tile_tilesmoke_od
irect_on_scratch_20260603T080931Z/normalized.SampleSheet.csv, /fsx/run_dir_mount
s/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_8tile_tilesmoke_od
irect_on_scratch_20260603T080931Z/lane_reports/L003/SampleSheet.csv, /fsx/run_di
r_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_8tile_tiles
moke_odirect_on_scratch_20260603T080931Z/lane_fastqs/L003/Reports/Demultiplex_St
ats.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconv
ert_l003_8tile_tilesmoke_odirect_on_scratch_20260603T080931Z/lane_fastqs/L003/Re
ports/fastq_list.csv
    resources: mem_mb=3000, mem_mib=2862, disk_mb=1000, disk_mib=954, tmpdir=/sc
ratch/dayoa_bclconvert_tmp, threads=1, time=5440, partition=i192bigmem, vcpu=1,
distribution=block, exclusive=, constraint=, exclude=, include=


            set -euo pipefail
            mkdir -p /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_
from_bclconvert_l003_8tile_tilesmoke_odirect_on_scratch_20260603T080931Z/logs
            : > /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_
bclconvert_l003_8tile_tilesmoke_odirect_on_scratch_20260603T080931Z/logs/run_bcl
convert.lane_fastqs_ready.log
            printf 'merge_lane_fastqs=false; lane FASTQs remain under %s for lan
es %s\n' \
              /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bc
lconvert_l003_8tile_tilesmoke_odirect_on_scratch_20260603T080931Z/lane_fastqs L0
03 >> /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert
_l003_8tile_tilesmoke_odirect_on_scratch_20260603T080931Z/logs/run_bclconvert.la
ne_fastqs_ready.log
            touch /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_fro
m_bclconvert_l003_8tile_tilesmoke_odirect_on_scratch_20260603T080931Z/logs/bclco
nvert.done


[Wed Jun  3 08:21:01 2026]
localrule produce_bclconvert_fastqs:
    input: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclco
nvert_l003_8tile_tilesmoke_odirect_on_scratch_20260603T080931Z/logs/validated.ok
, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l00
3_8tile_tilesmoke_odirect_on_scratch_20260603T080931Z/logs/bclconvert.done
    output: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclc
onvert_l003_8tile_tilesmoke_odirect_on_scratch_20260603T080931Z/fastqs.complete
    log: results/day/hg38/logs/produce_bclconvert_fastqs.log
    jobid: 0
    benchmark: results/day/hg38/benchmarks/produce_bclconvert_fastqs.bench.tsv
    reason: Missing output files: /fsx/run_dir_mounts/20260514_LH01106_0009_B23T
VLGLT4/fasts_from_bclconvert_l003_8tile_tilesmoke_odirect_on_scratch_20260603T08
0931Z/fastqs.complete, results/day/hg38/benchmarks/produce_bclconvert_fastqs.ben
ch.tsv; Input files updated by another job: /fsx/run_dir_mounts/20260514_LH01106
_0009_B23TVLGLT4/fasts_from_bclconvert_l003_8tile_tilesmoke_odirect_on_scratch_2
0260603T080931Z/logs/validated.ok, /fsx/run_dir_mounts/20260514_LH01106_0009_B23
TVLGLT4/fasts_from_bclconvert_l003_8tile_tilesmoke_odirect_on_scratch_20260603T0
80931Z/logs/bclconvert.done
    resources: mem_mb=3000, mem_mib=2862, disk_mb=1000, disk_mib=954, tmpdir=/de
v/shm, threads=1, time=5440, partition=i192,i128,i192mem, vcpu=1, distribution=b
lock, exclusive=, constraint=, exclude=, include=

touch /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert
_l003_8tile_tilesmoke_odirect_on_scratch_20260603T080931Z/fastqs.complete
Job stats:
job                             count    min threads    max threads
----------------------------  -------  -------------  -------------
bclconvert_validate_inputs          1              1              1
merge_bclconvert_tile_shards        1              1              1
produce_bclconvert_fastqs           1              1              1
run_bclconvert                      1              1              1
run_bclconvert_tile_shard           1            192            192
total                               5              1            192

Reasons:
    (check individual jobs above for details)
    input files updated by another job:
        merge_bclconvert_tile_shards, produce_bclconvert_fastqs, run_bclconvert,
 run_bclconvert_tile_shard
    missing output files:
        bclconvert_validate_inputs, merge_bclconvert_tile_shards, produce_bclcon
vert_fastqs, run_bclconvert, run_bclconvert_tile_shard

This was a dry-run (flag -n). The order of jobs does not reflect the order of ex
ecution.
RETURN CODE: 0
__DRY_SCRATCH_ODIRECT_RC__0
[Dslu](DAYOA) dy-r produce_bclconvert_fastqs -p -k -j 10 -T 0 --rerun-triggers m
time --configfile config/bclconvert_l003_8tile_tilesmoke_odirect_on_scratch_2026
0603T080931Z.yaml; echo __LIVE_SCRATCH_ODIRECT_RC__$?
Your config files in /fsx/analysis_results/dyec0602bcl/bcl_l003_8tile_tilesmoke_
odirect_on_scratch_20260603T080931Z/daylily-omics-analysis/config/day_profiles/s
lurm are newer than the templates. clear 2 go.
Executing: snakemake --profile=/fsx/analysis_results/dyec0602bcl/bcl_l003_8tile_
tilesmoke_odirect_on_scratch_20260603T080931Z/daylily-omics-analysis/config/day_
profiles/slurm produce_bclconvert_fastqs -p -k -j 10 -T 0 --rerun-triggers mtime
 --configfile config/bclconvert_l003_8tile_tilesmoke_odirect_on_scratch_20260603
T080931Z.yaml

JOBID|PARTITION|NAME|USER|ST|TIME|NODES|NODELIST(REASON)
