Completed 27 Bytes/27 Bytes (146 Bytes/s) with 1 file(s) remaining
upload: ../../../../../../var/folders/rk/2n95m40s1zs48qr48ynwhxwm0000gn/T/tmpu9nahesq to s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260603T110937Z_dfc39a0a/_write_test.txt
delete: s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260603T110937Z_dfc39a0a/_write_test.txt
Completed 442 Bytes/442 Bytes (2.5 KiB/s) with 1 file(s) remaining
upload: docs/plans/20260603T084759Z_dyec_dayoa_public_docs_benchmark/generated_sample_configs/dyec5128_hg003_5x_ilmn_snv_20260603T110935Z/20260603T110937Z_dfc39a0a_samples.tsv to s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260603T110937Z_dfc39a0a/20260603T110937Z_dfc39a0a_samples.tsv
Completed 945 Bytes/945 Bytes (5.2 KiB/s) with 1 file(s) remaining
upload: docs/plans/20260603T084759Z_dyec_dayoa_public_docs_benchmark/generated_sample_configs/dyec5128_hg003_5x_ilmn_snv_20260603T110935Z/20260603T110937Z_dfc39a0a_units.tsv to s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260603T110937Z_dfc39a0a/20260603T110937Z_dfc39a0a_units.tsv
Precheck passed: rows checked=1, samples checked=1, source objects checked=20, concordance directories checked=1.
Remote staging completed successfully.
Remote FSx stage directory: /fsx/staging/staged_external_sequencing_data/remote_stage_20260603T110937Z_dfc39a0a
Staging DRA: dra-0f90aa109f8365d9f
Staging DRA lifecycle: CREATING
Staged files (0):
Generated configuration files:
  samples.tsv -> s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260603T110937Z_dfc39a0a/20260603T110937Z_dfc39a0a_samples.tsv
  units.tsv   -> s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260603T110937Z_dfc39a0a/20260603T110937Z_dfc39a0a_units.tsv
DAY-EC activated.
DAY-EC activated.
__DAYLILY_STAGE_DIR__=/fsx/staging/staged_external_sequencing_data/remote_stage_20260603T110937Z_dfc39a0a
__DAYLILY_STAGE_SAMPLES__=/fsx/staging/staged_external_sequencing_data/remote_stage_20260603T110937Z_dfc39a0a/20260603T110937Z_dfc39a0a_samples.tsv
__DAYLILY_STAGE_UNITS__=/fsx/staging/staged_external_sequencing_data/remote_stage_20260603T110937Z_dfc39a0a/20260603T110937Z_dfc39a0a_units.tsv
DAY-EC activated.
DAY-EC activated.
__DAYLILY_SESSION__=dyec5128_hg003_5x_ilmn_snv_20260603T110935Z
__DAYLILY_TMUX_SESSION__=dyec5128_hg003_5x_ilmn_snv_20260603T110935Z
__DAYLILY_RUN_DIR__=/home/ubuntu/daylily-runs/dyec5128_hg003_5x_ilmn_snv_20260603T110935Z
__DAYLILY_REPO_PATH__=/fsx/analysis_results/ubuntu/dyec5128_hg003_5x_ilmn_snv_20260603T110935Z/daylily-omics-analysis
Tmux session 'dyec5128_hg003_5x_ilmn_snv_20260603T110935Z' created on the head node.
Run state directory: /home/ubuntu/daylily-runs/dyec5128_hg003_5x_ilmn_snv_20260603T110935Z
Workflow repo path: /fsx/analysis_results/ubuntu/dyec5128_hg003_5x_ilmn_snv_20260603T110935Z/daylily-omics-analysis
Reconnect with: daylily-ssh-into-headnode --profile lsmc --region us-west-2 --cluster dyec5128
Then run: tmux attach -t dyec5128_hg003_5x_ilmn_snv_20260603T110935Z
Samples run receipt: docs/plans/20260603T084759Z_dyec_dayoa_public_docs_benchmark/generated_sample_configs/dyec5128_hg003_5x_ilmn_snv_20260603T110935Z/20260603T110937Z_dfc39a0a_samples_run_receipt.json
