LICENSE
MANIFEST.in
README.md
pyproject.toml
examples/aav2_vp1.fasta
examples/aav9_vp1.fasta
examples/fetch_examples.py
examples/hbb_human.fasta
examples/hbb_human_mrna.fasta
examples/hbb_mouse.fasta
examples/hbb_mouse_mrna.fasta
scripts/build_matrices.py
scripts/check_wheel.py
src/align_pair/__init__.py
src/align_pair/__main__.py
src/align_pair/aligner.py
src/align_pair/alphabet.py
src/align_pair/analysis.py
src/align_pair/cli.py
src/align_pair/matrices.py
src/align_pair/matrix_data.py
src/align_pair/metrics.py
src/align_pair/pairview.py
src/align_pair/py.typed
src/align_pair/reader.py
src/align_pair/report.py
src/align_pair/rows.py
src/align_pair/text.py
src/norvara_align_pair.egg-info/PKG-INFO
src/norvara_align_pair.egg-info/SOURCES.txt
src/norvara_align_pair.egg-info/dependency_links.txt
src/norvara_align_pair.egg-info/entry_points.txt
src/norvara_align_pair.egg-info/requires.txt
src/norvara_align_pair.egg-info/top_level.txt
tests/conftest.py
tests/reference.py
tests/test_aligner.py
tests/test_alphabet.py
tests/test_analysis.py
tests/test_cli.py
tests/test_differential.py
tests/test_matrices.py
tests/test_metrics.py
tests/test_package.py
tests/test_pairview.py
tests/test_reader.py
tests/test_readme.py
tests/test_reference_examples.py
tests/test_report.py
tests/test_rows.py
tests/test_text.py