LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
setup.py
dedup/__init__.py
dedup/_fast.c
dedup/_fast.pyx
dedup/cli.py
dedup/fgbiolike.py
dedup/picardlike.py
tests/__init__.py
tests/test_dedup.py
tests/test_fgbiolike.py
tests/benchmark/README.md
tests/benchmark/compare_flags.py
tests/benchmark/make_stress_bam.py
tests/benchmark/run_benchmark.py
tests/data/NA12891.bam
tests/data/NA12892.bam
tests/data/make_umi_bam.py
tests/data/synthetic_optical.bam
tests/data/umi_consensus.bam
tests/data/umi_consensus.consensus.golden.bam
tests/data/umi_consensus.grouped.golden.bam