Evaluation Raw Dataset



Statistical Metric

· Variation Analysis (F Test) of Each Data

· K-S Test of Each Pair Batch

· Measures of confounding between Batch and Condition



Biological Metric

· Batch/Domain Estimate

· K Nearest Neighbor Batch Effects Test (KBET)

· Local Inverse Simpson's Index (LISI)

· Silhouette Score


· Biological Visualization