Evaluation Raw Dataset
Statistical Metric
· Variation Analysis (F Test) of Each Data
· K-S Test of Each Pair Batch
· Measures of confounding between Batch and Condition
Biological Metric
· Batch/Domain Estimate
· K Nearest Neighbor Batch Effects Test (KBET)
· Local Inverse Simpson's Index (LISI)
· Silhouette Score
· Biological Visualization
Copyright©Chao Zhang Email:zhangchao5@genomics.cn