# Data files (large, downloaded separately)
data/*.fa
data/*.fa.fai
data/*.fasta
data/*.fasta.fai
data/*.gz
data/*.bam
data/*.bai
data/*.xtc
data/*.trr
data/*.pdb
data/*.mmcif
data/*.smi
data/*.vcf
data/*.csv

# Keep the data README
!data/README.md

# Python
__pycache__/
*.pyc
*.pyo
*.egg-info/
dist/
build/
.eggs/

# Environments
.venv/
venv/

# IDE
.vscode/
.idea/

# Benchmark results (committed to ../results/ instead)
benchmarks/output/

# OS
Thumbs.db
.DS_Store
