pyyaml>=6.0
click>=8.0
biopython>=1.81
snakemake<8,>=7.32
pandas>=1.5
pulp<2.8
plotly>=5.0
jinja2>=3.0

[dev]
black<27,>=26
pytest>=9.0
pytest-cov>=5.0
mypy>=1.0
ruff>=0.5
