LICENSE
README.md
pyproject.toml
benchmark/benchmark_interp1d.py
benchmark/benchmark_interpnd.py
benchmark/benchmark_trace_cubes.py
benchmark/profile_pencilbeam_photon_forward_lineprof.py
docs/conf.py
docs/execute_examples.py
examples/gui_main_window.py
examples/gui_planning_widgets.py
examples/gui_workflow_widget.py
examples/intro_minimal_photons.py
examples/intro_minimal_protons.py
examples/mc_fred.py
examples/mc_topas.py
examples/pencilbeam_carbon.py
examples/pencilbeam_helium.py
examples/pencilbeam_oxygen.py
examples/pencilbeam_photon.py
examples/pencilbeam_photon_forward.py
examples/pencilbeam_proton.py
examples/pencilbeam_proton_let.py
examples/pencilbeam_vhee.py
examples/plan_analysis.py
examples/proton_mimicking.py
examples/raytracer_rad_depth.py
examples/utils_ai_agents.py
examples/utils_ai_models.py
examples/utils_backends.py
examples/utils_io.py
examples/utils_matrad.py
examples/utils_optimization.py
examples/utils_plotting.py
pyRadPlan/__init__.py
pyRadPlan/_settings.py
pyRadPlan.egg-info/PKG-INFO
pyRadPlan.egg-info/SOURCES.txt
pyRadPlan.egg-info/dependency_links.txt
pyRadPlan.egg-info/entry_points.txt
pyRadPlan.egg-info/requires.txt
pyRadPlan.egg-info/top_level.txt
pyRadPlan/ai/__init__.py
pyRadPlan/ai/agents/__init__.py
pyRadPlan/ai/agents/_cst_agents.py
pyRadPlan/ai/agents/_models.py
pyRadPlan/ai/agents/_plan_agents.py
pyRadPlan/ai/agents/_settings.py
pyRadPlan/ai/agents/_usage.py
pyRadPlan/ai/modelhub/__init__.py
pyRadPlan/ai/modelhub/_load_model.py
pyRadPlan/ai/modelhub/_preprocessor.py
pyRadPlan/ai/modelhub/_registry.py
pyRadPlan/ai/modelhub/_resolve.py
pyRadPlan/ai/modelhub/_settings.py
pyRadPlan/analysis/__init__.py
pyRadPlan/analysis/_dvh.py
pyRadPlan/analysis/_qi.py
pyRadPlan/core/__init__.py
pyRadPlan/core/_configurable.py
pyRadPlan/core/_exceptions.py
pyRadPlan/core/_grids.py
pyRadPlan/core/_paths.py
pyRadPlan/core/_progress.py
pyRadPlan/core/datamodel.py
pyRadPlan/core/np2sitk.py
pyRadPlan/core/resample.py
pyRadPlan/core/xp_utils/__init__.py
pyRadPlan/core/xp_utils/compat.py
pyRadPlan/core/xp_utils/helpers.py
pyRadPlan/core/xp_utils/jittable.py
pyRadPlan/core/xp_utils/typing.py
pyRadPlan/cst/__init__.py
pyRadPlan/cst/_cst.py
pyRadPlan/cst/_voi.py
pyRadPlan/ct/__init__.py
pyRadPlan/ct/_ct.py
pyRadPlan/ct/_hlut.py
pyRadPlan/data/TOPAS/input/beam_setup/TOPAS_beam_setup_biGaussian.txt.in
pyRadPlan/data/TOPAS/input/material_converter/TOPAS_schneider_converter.txt.in
pyRadPlan/data/TOPAS/input/scorer/TOPAS_scorer_doseToMedium.txt.in
pyRadPlan/data/TOPAS/input/scorer/TOPAS_scorer_doseToWater.txt.in
pyRadPlan/data/TOPAS/input/scorer/TOPAS_subscorer_LET.txt.in
pyRadPlan/data/TOPAS/input/template/beamSetup_template.txt
pyRadPlan/data/TOPAS/input/template/patient_template.txt
pyRadPlan/data/TOPAS/input/template/pyRadPlan_run_template.txt
pyRadPlan/data/ai_models/model_config.template.json
pyRadPlan/data/machines/VHEE_Focused.mat
pyRadPlan/data/machines/VHEE_Generic.mat
pyRadPlan/data/machines/carbon_Generic.mat
pyRadPlan/data/machines/helium_Generic.mat
pyRadPlan/data/machines/oxygen_Generic.mat
pyRadPlan/data/machines/photons_Generic.mat
pyRadPlan/data/machines/protons_Generic.mat
pyRadPlan/data/phantoms/TG119.mat
pyRadPlan/dij/__init__.py
pyRadPlan/dij/_compose_beam_dijs.py
pyRadPlan/dij/_dij.py
pyRadPlan/dose/__init__.py
pyRadPlan/dose/_calc_dose.py
pyRadPlan/dose/engines/__init__.py
pyRadPlan/dose/engines/_base.py
pyRadPlan/dose/engines/_base_montecarlo.py
pyRadPlan/dose/engines/_base_pencilbeam.py
pyRadPlan/dose/engines/_base_pencilbeam_particle.py
pyRadPlan/dose/engines/_factory.py
pyRadPlan/dose/engines/_fredmc.py
pyRadPlan/dose/engines/_hongpb.py
pyRadPlan/dose/engines/_svdpb.py
pyRadPlan/dose/engines/_topasmc.py
pyRadPlan/dose/engines/kernels/__init__.py
pyRadPlan/dose/engines/kernels/_calc_geo_dists_kernel.py
pyRadPlan/geometry/__init__.py
pyRadPlan/geometry/lps.py
pyRadPlan/gui/__init__.py
pyRadPlan/gui/apps.py
pyRadPlan/gui/workspace.py
pyRadPlan/gui/assets/__init__.py
pyRadPlan/gui/assets/logos/dkfz_logo_blue.svg
pyRadPlan/gui/assets/logos/dkfz_logo_white.svg
pyRadPlan/gui/assets/logos/pyradplan_logo_full_landscape.svg
pyRadPlan/gui/assets/logos/pyradplan_logo_skull_square.svg
pyRadPlan/gui/menus/__init__.py
pyRadPlan/gui/menus/_edit.py
pyRadPlan/gui/menus/_file.py
pyRadPlan/gui/menus/_help.py
pyRadPlan/gui/menus/_settings.py
pyRadPlan/gui/menus/_view.py
pyRadPlan/gui/widgets/__init__.py
pyRadPlan/gui/widgets/_analysis_widget.py
pyRadPlan/gui/widgets/_base.py
pyRadPlan/gui/widgets/_config_form.py
pyRadPlan/gui/widgets/_info_widget.py
pyRadPlan/gui/widgets/_log_console.py
pyRadPlan/gui/widgets/_logo_widget.py
pyRadPlan/gui/widgets/_result_widget.py
pyRadPlan/gui/widgets/ai/__init__.py
pyRadPlan/gui/widgets/ai/_ai_task_dialog.py
pyRadPlan/gui/widgets/analysis/_dvh.py
pyRadPlan/gui/widgets/analysis/_gamma.py
pyRadPlan/gui/widgets/analysis/_qi.py
pyRadPlan/gui/widgets/optimization/__init__.py
pyRadPlan/gui/widgets/optimization/_optimization_widget.py
pyRadPlan/gui/widgets/optimization/_status_window.py
pyRadPlan/gui/widgets/plan/__init__.py
pyRadPlan/gui/widgets/plan/_plan_widget.py
pyRadPlan/gui/widgets/result/__init__.py
pyRadPlan/gui/widgets/result/_labels.py
pyRadPlan/gui/widgets/result/_save_result_dialog.py
pyRadPlan/gui/widgets/result/quantity_widget.py
pyRadPlan/gui/widgets/result/viewer_options_widget.py
pyRadPlan/gui/widgets/result/visualization_widget.py
pyRadPlan/gui/widgets/result/vois_widget.py
pyRadPlan/gui/widgets/workflow/__init__.py
pyRadPlan/gui/widgets/workflow/_binary_import_dialog.py
pyRadPlan/gui/widgets/workflow/_dicom_import_dialog.py
pyRadPlan/gui/widgets/workflow/_image_import_dialog.py
pyRadPlan/gui/widgets/workflow/_workflow_widget.py
pyRadPlan/gui/windows/_analysis_win.py
pyRadPlan/gui/windows/_main_win.py
pyRadPlan/gui/windows/_result_win.py
pyRadPlan/io/__init__.py
pyRadPlan/io/_factory.py
pyRadPlan/io/_helpers.py
pyRadPlan/io/_load_save.py
pyRadPlan/io/base/__init__.py
pyRadPlan/io/base/_exporter.py
pyRadPlan/io/base/_importer.py
pyRadPlan/io/dicom/__init__.py
pyRadPlan/io/dicom/_export_common.py
pyRadPlan/io/dicom/_export_cst.py
pyRadPlan/io/dicom/_export_ct.py
pyRadPlan/io/dicom/_export_dose.py
pyRadPlan/io/dicom/_export_seg.py
pyRadPlan/io/dicom/_exporter.py
pyRadPlan/io/dicom/_handler.py
pyRadPlan/io/dicom/_helpers.py
pyRadPlan/io/dicom/_import_cst.py
pyRadPlan/io/dicom/_import_ct.py
pyRadPlan/io/dicom/_import_dose.py
pyRadPlan/io/dicom/_importer.py
pyRadPlan/io/matlab/__init__.py
pyRadPlan/io/matlab/_exporter.py
pyRadPlan/io/matlab/_handler.py
pyRadPlan/io/matlab/_importer.py
pyRadPlan/io/matlab/_matfile.py
pyRadPlan/io/npz/__init__.py
pyRadPlan/io/npz/_exporter.py
pyRadPlan/io/npz/_handler.py
pyRadPlan/io/npz/_importer.py
pyRadPlan/io/npz/_serialize.py
pyRadPlan/io/pickle/__init__.py
pyRadPlan/io/pickle/_exporter.py
pyRadPlan/io/pickle/_handler.py
pyRadPlan/io/pickle/_importer.py
pyRadPlan/io/sitk_based/__init__.py
pyRadPlan/io/sitk_based/_binary_import.py
pyRadPlan/io/sitk_based/base/__init__.py
pyRadPlan/io/sitk_based/base/_exporter.py
pyRadPlan/io/sitk_based/base/_importer.py
pyRadPlan/io/sitk_based/base/_serialize.py
pyRadPlan/io/sitk_based/meta_image/__init__.py
pyRadPlan/io/sitk_based/nifti/__init__.py
pyRadPlan/io/sitk_based/nrrd/__init__.py
pyRadPlan/machines/__init__.py
pyRadPlan/machines/_load.py
pyRadPlan/machines/_validate.py
pyRadPlan/machines/base/__init__.py
pyRadPlan/machines/base/_base.py
pyRadPlan/machines/base/_beam_modifier.py
pyRadPlan/machines/base/_external_beam.py
pyRadPlan/machines/base/_factory.py
pyRadPlan/machines/base/_internal_beam.py
pyRadPlan/machines/particles/__init__.py
pyRadPlan/machines/particles/_base.py
pyRadPlan/machines/particles/_beam_cutoff.py
pyRadPlan/machines/particles/_beam_emittance.py
pyRadPlan/machines/particles/_beam_energy.py
pyRadPlan/machines/particles/_beam_focus.py
pyRadPlan/machines/particles/_ions.py
pyRadPlan/machines/particles/_vhee.py
pyRadPlan/machines/particles/kernel/__init__.py
pyRadPlan/machines/particles/kernel/_base.py
pyRadPlan/machines/particles/kernel/_ions.py
pyRadPlan/machines/particles/kernel/_vhee.py
pyRadPlan/machines/photons/__init__.py
pyRadPlan/machines/photons/_base.py
pyRadPlan/machines/photons/_calculate_machine_scale.py
pyRadPlan/machines/photons/_linac.py
pyRadPlan/machines/photons/_svd_kernel.py
pyRadPlan/matRad/__init__.py
pyRadPlan/matRad/_engine.py
pyRadPlan/matRad/_matlab.py
pyRadPlan/matRad/_octave.py
pyRadPlan/optimization/__init__.py
pyRadPlan/optimization/_fluence_optimization.py
pyRadPlan/optimization/objectives/__init__.py
pyRadPlan/optimization/objectives/_eud.py
pyRadPlan/optimization/objectives/_factory.py
pyRadPlan/optimization/objectives/_max_dvh.py
pyRadPlan/optimization/objectives/_mean.py
pyRadPlan/optimization/objectives/_min_dvh.py
pyRadPlan/optimization/objectives/_objective.py
pyRadPlan/optimization/objectives/_squared_dev.py
pyRadPlan/optimization/objectives/_squared_mimicking.py
pyRadPlan/optimization/objectives/_squared_over.py
pyRadPlan/optimization/objectives/_squared_under.py
pyRadPlan/optimization/objectives/_std.py
pyRadPlan/optimization/problems/__init__.py
pyRadPlan/optimization/problems/_factory.py
pyRadPlan/optimization/problems/_nonlin_fluence.py
pyRadPlan/optimization/problems/_optiprob.py
pyRadPlan/optimization/problems/_simple_least_squares.py
pyRadPlan/optimization/solvers/__init__.py
pyRadPlan/optimization/solvers/_base_solvers.py
pyRadPlan/optimization/solvers/_factory.py
pyRadPlan/optimization/solvers/_ipopt.py
pyRadPlan/optimization/solvers/_scipy_solver.py
pyRadPlan/plan/__init__.py
pyRadPlan/plan/_plans.py
pyRadPlan/quantities/__init__.py
pyRadPlan/quantities/_alpha_dose.py
pyRadPlan/quantities/_base.py
pyRadPlan/quantities/_dose.py
pyRadPlan/quantities/_effect.py
pyRadPlan/quantities/_let.py
pyRadPlan/quantities/_let_x_dose.py
pyRadPlan/quantities/_rbe_x_dose.py
pyRadPlan/quantities/_resolver.py
pyRadPlan/quantities/_sqrt_beta_dose.py
pyRadPlan/raytracer/__init__.py
pyRadPlan/raytracer/_base.py
pyRadPlan/raytracer/_kernels.py
pyRadPlan/raytracer/_kernels_numba.py
pyRadPlan/raytracer/_siddon.py
pyRadPlan/scenarios/__init__.py
pyRadPlan/scenarios/_base.py
pyRadPlan/scenarios/_nominal.py
pyRadPlan/stf/__init__.py
pyRadPlan/stf/_beam.py
pyRadPlan/stf/_beamlet.py
pyRadPlan/stf/_exceptions.py
pyRadPlan/stf/_generate_stf.py
pyRadPlan/stf/_rangeshifter.py
pyRadPlan/stf/_ray.py
pyRadPlan/stf/_steeringinformation.py
pyRadPlan/stf/generators/__init__.py
pyRadPlan/stf/generators/_base.py
pyRadPlan/stf/generators/_externalbeam.py
pyRadPlan/stf/generators/_factory.py
pyRadPlan/stf/generators/_ions.py
pyRadPlan/stf/generators/_photons.py
pyRadPlan/stf/generators/_vhee.py
pyRadPlan/util/__init__.py
pyRadPlan/util/_jupyter.py
pyRadPlan/util/helpers.py
pyRadPlan/util/keyboard_listener.py
pyRadPlan/util/logging_utils.py
pyRadPlan/util/openmp.py
pyRadPlan/visualization/__init__.py
pyRadPlan/visualization/_plot_multiple_slices.py
pyRadPlan/visualization/_plot_slice.py
test/conftest.py
test/test_dij.py
test/test_grid.py
test/test_helpers.py
test/test_logging_utils.py
test/test_machine_model.py
test/test_matlabEngine.py
test/test_octaveEngine.py
test/test_openmp.py
test/test_plan.py
test/test_raytracer_kernels.py
test/test_raytracersiddon.py
test/test_scenarios.py
test/test_settings.py
test/ai/agents/test_cst_agents.py
test/ai/agents/test_models.py
test/ai/agents/test_plan_agents.py
test/ai/agents/test_usage.py
test/ai/modelhub/conftest.py
test/ai/modelhub/test_load_model.py
test/ai/modelhub/test_loader_machinery.py
test/ai/modelhub/test_preprocessor.py
test/ai/modelhub/test_registry.py
test/ai/modelhub/test_resolve.py
test/analysis/test_dvh.py
test/analysis/test_qi.py
test/core/test_configurable.py
test/core/test_coordinates.py
test/core/test_datamodel.py
test/core/test_np2sitk.py
test/core/test_paths.py
test/core/test_progress.py
test/core/test_resample.py
test/core/xp_utils/test_initialization.py
test/core/xp_utils/compat/test_backend_consistency.py
test/core/xp_utils/compat/test_interp1d_torch.py
test/core/xp_utils/compat/test_interpnd.py
test/core/xp_utils/compat/test_math_interp1d.py
test/core/xp_utils/compat/test_math_quantile.py
test/core/xp_utils/helpers/test_device_parsing.py
test/core/xp_utils/helpers/test_namespace_conversion.py
test/core/xp_utils/helpers/test_openblas_warning.py
test/core/xp_utils/helpers/test_scatter.py
test/cst/conftest.py
test/cst/test_VOI.py
test/cst/test_cst.py
test/ct/test_ct.py
test/ct/test_hlut.py
test/data/test_validate_test_data.py
test/data/ai_models/dummy_model/model.py
test/data/ai_models/dummy_model/preprocessor.py
test/dose/conftest.py
test/dose/test_base_pencilbeam.py
test/dose/test_dose_engine_base.py
test/dose/test_factory.py
test/dose/test_fred.py
test/dose/test_hongpb.py
test/dose/test_pb_geodist.py
test/dose/test_svdpb.py
test/dose/test_topas.py
test/dose/kernels/test_calc_geo_dists.py
test/geometry/test_lps.py
test/gui/conftest.py
test/gui/test_gui_disabled.py
test/gui/test_workspace.py
test/gui/widgets/test_base.py
test/gui/widgets/test_config_form.py
test/gui/widgets/test_widget_result.py
test/gui/widgets/ai/test_ai_task_dialog.py
test/gui/widgets/analysis/test_widget_analysis.py
test/gui/widgets/analysis/test_widget_dvh.py
test/gui/widgets/analysis/test_widget_gamma.py
test/gui/widgets/analysis/test_widget_qi.py
test/gui/widgets/optimization/test_status_window.py
test/gui/widgets/optimization/test_widget_optimization.py
test/gui/widgets/plan/test_widget_plan.py
test/gui/widgets/result/test_widget_quantity.py
test/gui/widgets/result/test_widget_viewer_options.py
test/gui/widgets/result/test_widget_visualization.py
test/gui/widgets/result/test_widget_vois.py
test/gui/widgets/workflow/test_import_dialogs.py
test/gui/widgets/workflow/test_widget_workflow.py
test/gui/windows/test_win_analysis.py
test/gui/windows/test_win_main.py
test/gui/windows/test_win_result.py
test/io/conftest.py
test/io/test_io_binary_import.py
test/io/test_io_dicom.py
test/io/test_io_factory.py
test/io/test_io_frontend.py
test/io/test_io_matlab.py
test/io/test_io_npz.py
test/io/test_io_pickle.py
test/io/test_io_sitk.py
test/machines/test_beam_modifiers.py
test/optimization/conftest.py
test/optimization/test_fluence_optiprob.py
test/optimization/test_ipopt_output.py
test/optimization/test_ipopt_solver.py
test/optimization/test_obj_history.py
test/optimization/test_objectives.py
test/optimization/test_opt_info.py
test/optimization/test_problem_factory.py
test/optimization/test_scipy_solver.py
test/optimization/test_solver_factory.py
test/quantities/test_alpha_dose_quantity.py
test/quantities/test_dose_quantity.py
test/quantities/test_effect_quantity.py
test/quantities/test_let_dose_quantity.py
test/quantities/test_let_quantity.py
test/quantities/test_rbe_x_dose_quantity.py
test/quantities/test_resolver.py
test/quantities/test_sqrt_beta_dose_quantity.py
test/stf/test_beamlet.py
test/stf/test_stf.py
test/stf/test_stf_gen.py
test/visualization/test_plot_multiple_slices.py
test/visualization/test_plot_slice.py