absl-py==2.3.1
-e git+ssh://git@github.com/AMICI-dev/AMICI.git@05f22cc99093425a56da701f536117e9e300ecea#egg=amici&subdirectory=python/sdist
annotated-types==0.7.0
antimony==2.14.0
antlr4-python3-runtime==4.13.1
anyio==4.11.0
argon2-cffi==25.1.0
argon2-cffi-bindings==25.1.0
arrow==1.3.0
asttokens==3.0.0
async-lru==2.0.5
attrs==25.3.0
babel==2.17.0
beartype==0.21.0
beautifulsoup4==4.13.5
bleach==6.2.0
certifi==2025.8.3
cffi==2.0.0
charset-normalizer==3.4.3
chex==0.1.91
cmake==4.1.0
cmake-build-extension==0.6.0
colorama==0.4.6
comm==0.2.3
compress-pickle==2.1.0
contourpy==1.3.3
coverage==7.10.7
cycler==0.12.1
debugpy==1.8.17
decorator==5.2.1
defusedxml==0.7.1
diffrax==0.7.0
elementpath==5.0.4
equinox==0.11.11
executing==2.2.1
fastjsonschema==2.21.2
filelock==3.19.1
flexcache==0.3
flexparser==0.4
fonttools==4.60.0
fqdn==1.5.1
fsspec==2025.9.0
gitdb==4.0.12
GitPython==3.1.45
h11==0.16.0
h5py==3.14.0
httpcore==1.0.9
httpx==0.28.1
idna==3.10
iniconfig==2.1.0
interpax==0.3.6
ipykernel==6.30.1
ipython==9.5.0
ipython_pygments_lexers==1.1.1
ipywidgets==8.1.7
isoduration==20.11.0
jax==0.5.0
jaxlib==0.5.0
jaxtyping==0.3.2
jedi==0.19.2
Jinja2==3.1.6
json5==0.12.1
jsonpointer==3.0.0
jsonschema==4.25.1
jsonschema-specifications==2025.9.1
jupyter==1.1.1
jupyter-console==6.6.3
jupyter-events==0.12.0
jupyter-lsp==2.3.0
jupyter_client==8.6.3
jupyter_core==5.8.1
jupyter_server==2.17.0
jupyter_server_terminals==0.5.3
jupyterlab==4.4.7
jupyterlab_pygments==0.3.0
jupyterlab_server==2.27.3
jupyterlab_widgets==3.0.15
kiwisolver==1.4.9
lark==1.3.0
lineax==0.0.8
lxml==6.0.2
lz4==4.4.4
MarkupSafe==3.0.2
matplotlib==3.10.6
matplotlib-inline==0.1.7
mistune==3.1.4
mkstd==0.0.10
ml_dtypes==0.5.3
mpmath==1.3.0
nbclient==0.10.2
nbconvert==7.16.6
nbformat==5.10.4
nest-asyncio==1.6.0
networkx==3.5
ninja==1.13.0
notebook==7.4.5
notebook_shim==0.2.4
numpy==2.2.3
opt_einsum==3.4.0
optax==0.2.6
optimistix==0.0.10
oyaml==1.0
packaging==25.0
pandas==2.3.2
pandocfilters==1.5.1
parso==0.8.5
petab @ git+https://github.com/petab-dev/libpetab-python.git@99373c4340512def5a23bf2a75805c3f88251251
petab_sciml @ git+https://github.com/PEtab-dev/petab_sciml.git@80af726a3c2e430a068ea1ebf567f77c072fd85f#subdirectory=src/python
pexpect==4.9.0
pillow==11.3.0
Pint==0.25
platformdirs==4.4.0
pluggy==1.6.0
pooch==1.8.2
prometheus_client==0.23.1
prompt_toolkit==3.0.52
psutil==7.1.0
ptyprocess==0.7.0
pure_eval==0.2.3
pyarrow==21.0.0
pycparser==2.23
pydantic==2.11.9
pydantic_core==2.33.2
pydantic_numpy==8.0.1
Pygments==2.19.2
pyparsing==3.2.5
pytest==8.4.2
pytest-cov==7.0.0
pytest-rerunfailures==16.0.1
python-dateutil==2.9.0.post0
python-json-logger==3.3.0
python-libsbml==5.20.5
pytz==2025.2
PyYAML==6.0.2
pyzmq==27.1.0
referencing==0.36.2
requests==2.32.5
rfc3339-validator==0.1.4
rfc3986-validator==0.1.1
rfc3987-syntax==1.1.0
rpds-py==0.27.1
ruamel.yaml==0.18.15
ruamel.yaml.clib==0.2.14
sbmlmath==0.4.0
scipy==1.16.2
seaborn==0.13.2
semver==3.0.4
Send2Trash==1.8.3
setuptools==80.9.0
setuptools-scm==9.2.0
shyaml==0.6.2
six==1.17.0
smmap==5.0.2
sniffio==1.3.1
soupsieve==2.8
stack-data==0.6.3
swig==4.3.1.post0
sympy==1.14.0
terminado==0.18.1
tinycss2==1.4.0
toolz==1.0.0
toposort==1.10
torch==2.8.0
torchvision==0.23.0
tornado==6.5.2
traitlets==5.14.3
types-python-dateutil==2.9.0.20250822
typing-inspection==0.4.1
typing_extensions==4.15.0
tzdata==2025.2
uri-template==1.3.0
urllib3==2.5.0
wadler_lindig==0.1.7
wcwidth==0.2.14
webcolors==24.11.1
webencodings==0.5.1
websocket-client==1.8.0
widgetsnbextension==4.0.14
xmlschema==4.1.0
