h5py>=3.12
mkstd>=0.0.10
numpy>=2.1
pandas
pydantic
python-libsbml
ruamel.yaml

[doc]
sphinx>=8.1.3
sphinxcontrib-napoleon>=0.7
sphinx-markdown-tables>=0.0.15
sphinx-rtd-theme>=0.5.1
pydata-sphinx-theme>=0.18.0
nbsphinx>=0.9.5
pandoc>=2.4
nbconvert>=7.16.4
ipykernel>=6.23.1
ipython>=7.21.0
sphinx-autodoc-typehints>=3.10
myst_parser

[test]
pytest
pytest-cov
torch

[torch]
torch
