Installation¶
Dependencies¶
PyLocator relies on a bunch of libraries:
- VTK: 3d-visualization
- nibabel: Reading the Nifti-format for MRI data
- NumPy: Sophisticated array-types for Python
- GTK+: For the GUI.
- GTK+ OpenGL Extension
On a Debian-like environement, these dependencies can usually be resolved via a simple:
sudo apt-get install python-vtk python-nibabel python-numpy python-gtk2 python-gtkglext1
This should prepare your system for PyLocator. On Windows and OS X, things are a little bit more complicated, but Python distributions like EPD or Python(x,y) should be helpful here.
Depending on your configuration, nibabel has to be downloaded separately.
Can you help with detailed instructions for these operating systems? Please tell me!
How to download¶
The source code of PyLocator is kept in a public GIT repository:
http://www.github.com/thorstenkranz/PyLocator
You can simply clone this repository via:
git clone git://github.com/thorstenkranz/PyLocator.git
Alternatively, you can download a tarball that is update once in a while from
http://pylocator.thorstenkranz.de/download/pylocator-0.2.dev.tar.gz
Extract this archive using your preferred archive manager or in a terminal using something like:
tar xfvz PyLocator.tar.gz
Installing¶
Once you obtained the source code, enter the PyLocator-directory and type:
python setup.py build
python setup.py install --user # For per-user installation
# or
sudo python setup.py install # system-wide installation
After these steps, the package pylocator should be properly installed. You can then run the program by running:
python ~/.local/lib/python2.?/site-packages/pylocator/pylocator.py
in case of a per-user installation or:
python /usr/local/lib/python2.?/site-packages/pylocator/pylocator.py
or similar in case of a system-wide installation. Replace the 2.? by your python version number.
This solution isn’t perfect yet, I’ll clean it up soon. Of course you can create some little bash-script that calls this for you and put it into ~/bin/pylocator or similar:
#! /bin/bash
python ~/.local/lib/python2.?/site-packages/pylocator/pylocator.py $@
