tem op• Data kinds: image2d → image2d
• Call: import fullseye as fs; fs.ledger.tem_ctf_correct(image, pixel_A=1.0, kv=300.0, cs_mm=2.7, defocus_A=10000.0, astig_A=None, astig_angle_deg=None, amplitude_contrast=0.07, phase_shift_deg=0.0, method='phase_flip', snr=None) (to call the implementation directly, import temsim; temsim.tem_ctf_correct(image, pixel_A=1.0, kv=300.0, cs_mm=2.7, defocus_A=10000.0, astig_A=None, astig_angle_deg=None, amplitude_contrast=0.07, phase_shift_deg=0.0, method='phase_flip', snr=None); from the registry, opsoptics.get("tem_ctf_correct"))
CTF correction (image2d). method="phase_flip": F⁻¹[ F(I − ⟨I⟩) · sign(CTF) ] (phase flipping, amplitudes unchanged) / "wiener": F⁻¹[ F(I − ⟨I⟩) · CTF / (CTF² + 1/snr) ].
> The detailed description below is the original text — the summary and the headings are translated.
補正後は正のポテンシャル(原子)が明るく写る向き(I − 1 ≈ 2 Φ CTF に sign(CTF) か CTF を掛けるので)。焦点外れを間違えると、零点の外側で符号を逆に掛けて像が壊れる(PoC の探針)。包絡は掛けない(位相反転は振幅を戻さない、ウィーナーは snr が高周波の増幅を抑える)。snr はウィーナーだけの引数(None = 10、位相反転に渡すと ValueError)。astig_A / astig_angle_deg は None = 非点収差なし。
Every optics op validates its input before computing (nothing slips through silently):
• Units are baked into the argument name — _mm / _um / _deg / _mrad. Confusing mm with µm does not crash; it yields a plausible-looking wrong answer, so the name prevents it. Nothing here guesses the unit from the magnitude.
• Strings raise ValueError — float('50') succeeds, so an unparsed configuration value would slip through as a length (measured: thin_lens('50', '200') returned a plausible 66.667 mm). bool is refused too, as the implicit promotion True == 1.
• complex / masked arrays raise ValueError (real-valued slots only; silently dropping the imaginary part or peeling off the mask is refused). NaN/Inf raises ValueError on every input.
• Division by zero and its relatives are refused by name: focal length 0, radius of curvature 0, refractive index <= 0, a fully opaque aperture (all zeros, so the normalisation is 0/0), a PSF whose sum is <= 0, a Stokes vector with S0 = 0, and an object sitting at the front focal point (the image is at infinity).
• Only two ops return a non-finite value, and both state it as a contract: depth_of_field returns far_mm = inf beyond the hyperfocal distance (that is what the hyperfocal distance means), and gaussian_beam returns wavefront_radius_mm = inf at the waist (the radius of curvature of a plane wavefront). Both also return a finite companion (far_is_infinite / curvature_per_mm). Any other silent NaN/Inf is detected internally and raises ValueError — "float64 overflowed" and "the answer is infinite" are different claims, so the first is never returned wearing the face of the second.
• Size caps: generated grids are capped by optics.MAX_GRID (4096); supplied fields/PSFs/apertures by optics.MAX_FIELD_ELEMENTS (2^24); ABCD element chains by optics.MAX_SYSTEM_ELEMENTS (1024); Zernike by MAX_ZERNIKE_TERMS (512) / MAX_ZERNIKE_ORDER (40) / MAX_ZERNIKE_BASIS (2^25). This closes, fail-closed, the paths where a small argument triggers a huge internal allocation (measured: n_max=40 × 4096² needs 108 GB).
• Physically impossible states are refused too: a Stokes vector with degree of polarisation > 1, negative transmittance, negative intensity, and invalid Zernike indices such as n-|m| odd.
• Sample-data catalog (download URLs / licences) — 2-D uses skimage.data (BSD/public domain) plus synthetic images; 3-D lists download URLs for real data sources (Stanford, PDS, …).
• Operator provenance and references — the sources of the research/methods this op family came from.
• The canonical algorithm (author, year) and its uses are named in the family usage guide above.
• poc_tem_ctf_thon_rings — py -3.11 examples/poc_tem_ctf_thon_rings.py
image2d as input)fraunhofer_pattern · pupil_psf · pupil_blur · psf_to_mtf · edge_spread · veiling_glare_index · emva_pair_statistics · emva_defect_pixels
tem)tem_wavelength · tem_scherzer · tem_ctf · tem_ctf_profile · tem_projected_potential · tem_amorphous_film · tem_image_weak_phase · tem_multislice
*Provenance: temsim.py — OPTICS operator registry. This per-op note is generated by tools/opdocs.py md (do not hand-edit).*
© 2026 Kazufumi Furuse — Fullseye operator documentation. Licensed under Apache-2.0.