LICENSE
README.md
pyproject.toml
src/fungtion/__init__.py
src/fungtion/__main__.py
src/fungtion/_paths.py
src/fungtion/analysis_outputs.py
src/fungtion/cli.py
src/fungtion/feature_extraction.py
src/fungtion/html_report.py
src/fungtion/output_codes.py
src/fungtion/predict.py
src/fungtion/predict_core.R
src/fungtion/setup_models.py
src/fungtion.egg-info/PKG-INFO
src/fungtion.egg-info/SOURCES.txt
src/fungtion.egg-info/dependency_links.txt
src/fungtion.egg-info/entry_points.txt
src/fungtion.egg-info/requires.txt
src/fungtion.egg-info/top_level.txt
src/fungtion/assets/images/Fungtion_logo_with_black_text_dpi_150.png
src/fungtion/assets/images/Fungtion_logo_with_white_text_dpi_72.png
src/fungtion/assets/web_static/css/base.css
src/fungtion/assets/web_static/css/bootstrap-3.3.0.min.css
src/fungtion/assets/web_static/css/bootstrap-3.3.1.min.css
src/fungtion/assets/web_static/css/bootstrap-3.3.6.min.css
src/fungtion/assets/web_static/css/bootstrap-table.min.css
src/fungtion/assets/web_static/css/bootstrap-theme-3.3.1.min.css
src/fungtion/assets/web_static/css/bootstrap-toggle.min.css
src/fungtion/assets/web_static/css/customized_style.css
src/fungtion/assets/web_static/css/font-awesome.min.css
src/fungtion/assets/web_static/css/googleapis.css
src/fungtion/assets/web_static/css/jquery.fileupload-ui.css
src/fungtion/assets/web_static/css/master-v=1438676717.css
src/fungtion/assets/web_static/css/master-v=1438676718.css
src/fungtion/assets/web_static/css/nouislider.min.css
src/fungtion/assets/web_static/css/phylogram_d3_styles.css
src/fungtion/assets/web_static/css/style.css
src/fungtion/assets/web_static/css/unirule.css
src/fungtion/assets/web_static/css/zoom.css
src/fungtion/assets/web_static/fonts/FontAwesome.otf
src/fungtion/assets/web_static/fonts/fontawesome-webfont.eot
src/fungtion/assets/web_static/fonts/fontawesome-webfont.svg
src/fungtion/assets/web_static/fonts/fontawesome-webfont.ttf
src/fungtion/assets/web_static/fonts/fontawesome-webfont.woff
src/fungtion/assets/web_static/fonts/glyphicons-halflings-regular-.eot
src/fungtion/assets/web_static/fonts/glyphicons-halflings-regular.eot
src/fungtion/assets/web_static/fonts/glyphicons-halflings-regular.svg
src/fungtion/assets/web_static/fonts/glyphicons-halflings-regular.ttf
src/fungtion/assets/web_static/fonts/glyphicons-halflings-regular.woff
src/fungtion/assets/web_static/images/help.gif
src/fungtion/assets/web_static/js/alignment.min-v=1447853372.js
src/fungtion/assets/web_static/js/bio-pv.min-v=1438676717.js
src/fungtion/assets/web_static/js/blast.js
src/fungtion/assets/web_static/js/blaster.js
src/fungtion/assets/web_static/js/blaster.min.js
src/fungtion/assets/web_static/js/blaster_v2.js
src/fungtion/assets/web_static/js/bootstrap-3.3.1.min.js
src/fungtion/assets/web_static/js/bootstrap-3.3.6.min.js
src/fungtion/assets/web_static/js/bootstrap-table-export.js
src/fungtion/assets/web_static/js/bootstrap-table.min.js
src/fungtion/assets/web_static/js/bootstrap-toggle.min.js
src/fungtion/assets/web_static/js/colorbrewer.min.js
src/fungtion/assets/web_static/js/d3.v3.min.js
src/fungtion/assets/web_static/js/echarts.min.js
src/fungtion/assets/web_static/js/html2canvas.js
src/fungtion/assets/web_static/js/html2canvas.min.js
src/fungtion/assets/web_static/js/html2canvas_BAK.js
src/fungtion/assets/web_static/js/html2canvas_old.js
src/fungtion/assets/web_static/js/jquery-1.11.1.min.js
src/fungtion/assets/web_static/js/jquery-2.1.4.min.js
src/fungtion/assets/web_static/js/jquery-2.2.4.min.js
src/fungtion/assets/web_static/js/jquery.fileupload.js
src/fungtion/assets/web_static/js/jquery.iframe-transport.js
src/fungtion/assets/web_static/js/jquery.min.js
src/fungtion/assets/web_static/js/jquery.tablesorter-2.0.5.min.js
src/fungtion/assets/web_static/js/jsphylosvg-min.js
src/fungtion/assets/web_static/js/newick.js
src/fungtion/assets/web_static/js/nouislider.min.js
src/fungtion/assets/web_static/js/phylosvg-min.js
src/fungtion/assets/web_static/js/phylosvg-min_bak.js
src/fungtion/assets/web_static/js/raphael-min.js
src/fungtion/assets/web_static/js/structure.min-v=1438676717.js
src/fungtion/assets/web_static/js/tableExport.js
src/fungtion/assets/web_static/js/templateChart.min-v=1386598516.js
src/fungtion/assets/web_static/js/templates.min-v=1403178841.js
src/fungtion/assets/web_static/js/unslider-min.js
src/fungtion/assets/web_static/js/zoom.js
src/fungtion/assets/web_static/js/google-analytics/ga.js
src/fungtion/assets/web_static/js/phylogram_d3/phylogram_d3.js
src/fungtion/assets/web_static/js/phylogram_d3/q2_phylogram.js
src/fungtion/assets/web_static/js/phylogram_d3/utils.js
src/fungtion/assets/web_static/js/phylogram_d3/lib/tooltip.js
src/fungtion/assets/web_static/js/vendor/jquery.ui.widget.js
src/fungtion/assets/web_static/xmlfile/Fungtion_positive.json
src/fungtion/model/FungalEffector_esm_uniref50_svm_1.rds
src/fungtion/model/FungalEffector_esm_uniref50_svm_2.rds
src/fungtion/model/FungalEffector_esm_uniref50_svm_3.rds
src/fungtion/model/FungalEffector_esm_uniref50_svm_4.rds
src/fungtion/model/FungalEffector_esm_uniref50_svm_5.rds
src/fungtion/reference_data/FungalEffector_positive.fasta
src/fungtion/reference_data/FungalEffector_positive_esm_uniref50.csv
src/fungtion/reference_data/FungalEffector_positive_similarity_matrix/FungalEffector_positive_cosine_matrix_esm_uniref50.csv
src/fungtion/reference_data/FungalEffector_positive_similarity_matrix/FungalEffector_positive_distance_matrix_esm_uniref50.csv
tests/test_cli.py
tests/test_feature_extraction.py
tests/test_output_codes.py
tests/test_predict.py
tests/test_setup_models.py