Sequence	N-term cleavage window	C-term cleavage window	Amino acid before	First amino acid	Second amino acid	Second last amino acid	Last amino acid	Amino acid after	A Count	R Count	N Count	D Count	C Count	Q Count	E Count	G Count	H Count	I Count	L Count	K Count	M Count	F Count	P Count	S Count	T Count	W Count	Y Count	V Count	U Count	O Count	Length	Missed cleavages	Mass	Proteins	Leading razor protein	Start position	End position	Unique (Groups)	Unique (Proteins)	Charges	PEP	Score	Experiment SampleA_1	Experiment SampleB_1	Intensity	Intensity SampleA_1	Intensity SampleB_1	Reverse	Potential contaminant	id	Protein group IDs	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	Taxonomy IDs	MS/MS Count	LFQ intensity SampleA_1	LFQ intensity SampleB_1
AACDLVR	IRRDLEGSDIDTRRRAACDLVRGLCKFFEG	SDIDTRRRAACDLVRGLCKFFEGPVTGIFS	R	A	A	V	R	G	2	1	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	7	0	803.39597	sp|P55060|XPO2_HUMAN	sp|P55060|XPO2_HUMAN	385	391	yes	yes	2	0.0020666	86.512		1	3575500	0	3575500			0	355	0	0	0	0			1	0	3575500
AAVTSLFAK	LATTQTDTMLSAEEKAAVTSLFAKVKVDEV	LSAEEKAAVTSLFAKVKVDEVGGEALGRLL	K	A	A	A	K	V	3	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	1	0	0	1	0	0	9	0	906.51747	CON__Q3SX09	CON__Q3SX09	64	72	yes	yes	2	0.0065003	65.252	1	1	275620000	94165000	181460000		+	10	11	10	12;13	12;13	12			2	158330000	181460000
DNALLSAIEESRK	PVKDTDIQGFLKNEKDNALLSAIEESRKRT	EKDNALLSAIEESRKRTFGMAEEYHRESML	K	D	N	R	K	R	2	1	1	1	0	0	2	0	0	1	2	1	0	0	0	2	0	0	0	0	0	0	13	1	1444.7522	sp|Q8N1F7|NUP93_HUMAN	sp|Q8N1F7|NUP93_HUMAN	107	119	yes	yes	3	0.024697	24.935		1	833740	0	833740			142	534	142	191	192	192			0	0	833740
EVSSATNALR	SRSLKMRGQAFVIFKEVSSATNALRSMQGF	FVIFKEVSSATNALRSMQGFPFYDKPMRIQ	K	E	V	L	R	S	2	1	1	0	0	0	1	0	0	0	1	0	0	0	0	2	1	0	0	1	0	0	10	0	1046.5356	sp|P09012|SNRPA_HUMAN	sp|P09012|SNRPA_HUMAN	61	70	yes	yes	2	0.020338	40.352		1	3987700	0	3987700			277	142	277	374	377	377			0	0	3987700
FNTGPVGK	QIRMCKDLKHLIYYRFNTGPVGKGPGCGFW	KHLIYYRFNTGPVGKGPGCGFWAAGWRVWL	R	F	N	G	K	G	0	0	1	0	0	0	0	2	0	0	0	1	0	1	1	0	1	0	0	1	0	0	8	0	818.42865	sp|Q6P2Q9|PRP8_HUMAN	sp|Q6P2Q9|PRP8_HUMAN	616	623	yes	yes	2	0.0044957	76.134		1	2807100	0	2807100			311	514	311	416	419	419			1	0	2807100
HGRPGIGATHSSR	GHYLGEFSITYKPVKHGRPGIGATHSSRFI	VKHGRPGIGATHSSRFIPLK__________	K	H	G	S	R	F	1	2	0	0	0	0	0	3	2	1	0	0	0	0	1	2	1	0	0	0	0	0	13	1	1331.6807	sp|P62841|RS15_HUMAN	sp|P62841|RS15_HUMAN	128	140	yes	yes	3	3.7641E-13	126.17	1	1	39737000	13547000	26191000			374	393	374	502;503	505;506	506			2	22777000	26191000
ISTVVSSK	ADNKCLLRATDGKKKISTVVSSKEVNKFQM	ATDGKKKISTVVSSKEVNKFQMAYSNLLRA	K	I	S	S	K	E	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	3	1	0	0	2	0	0	8	0	819.47018	sp|P37108|SRP14_HUMAN	sp|P37108|SRP14_HUMAN	67	74	yes	yes	2	4.541E-08	122.13		1	9167700	0	9167700			466	277	466	620	625	625			1	0	9167700
LAAEEER				L	A	E	R		2	1	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	7	0	816.39775		REV__sp|Q6Y7W6|GGYF2_HUMAN			yes	yes	2	0.01276	69.432		1	38285000	0	38285000	+		486	15	487	647	652	652			1	0	38285000
MPSLPSYK	PPQEDAPSVDIANIRMPSLPSYKVGDKIAT	VDIANIRMPSLPSYKVGDKIATRKAYGQAL	R	M	P	Y	K	V	0	0	0	0	0	0	0	0	0	0	1	1	1	0	2	2	0	0	1	0	0	0	8	0	921.46299	sp|P29401|TKT_HUMAN	sp|P29401|TKT_HUMAN	303	310	yes	yes	2	7.405E-08	113.5		1	7371100	0	7371100			671	236	673	887	900	900	58		1	0	7371100
MQEENITR	EPKVGIKTIKVYCQRMQEENITRALIVVQQ	IKVYCQRMQEENITRALIVVQQGMTPSAKQ	R	M	Q	T	R	A	0	1	1	0	0	1	2	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	8	0	1019.4706	sp|P19388|RPAB1_HUMAN	sp|P19388|RPAB1_HUMAN	94	101	yes	yes	2	0.0090714	61.999	1		1244800	1244800	0			672	193	674	888	901	901	41		1	2093100	0
NLILAGVK	VLLVGLKGLGAEIAKNLILAGVKGLTMLDH	LGAEIAKNLILAGVKGLTMLDHEQVTPEDP	K	N	L	V	K	G	1	0	1	0	0	0	0	1	0	1	2	1	0	0	0	0	0	0	0	1	0	0	8	0	826.52764	sp|Q9UBE0|SAE1_HUMAN	sp|Q9UBE0|SAE1_HUMAN	54	61	yes	yes	2	0.028021	50.966		1	6219700	0	6219700			713	625	715	940	954	954			1	0	6219700
PHTLDGR	KFKDPNCVGTVLASRPHTLDGRNIDPKPCT	VGTVLASRPHTLDGRNIDPKPCTPRGMQPE	R	P	H	G	R	N	0	1	0	1	0	0	0	1	1	0	1	0	0	0	1	0	1	0	0	0	0	0	7	0	794.4035	sp|Q96EP5|DAZP1_HUMAN	sp|Q96EP5|DAZP1_HUMAN	72	78	yes	yes	2	0.003372	83.614		1	1460400	0	1460400			756	564	758	1002	1018	1018			1	0	1460400
RDEDRHDINK	TKPQMQEERRAKRRKRDEDRHDINKMKGYT	AKRRKRDEDRHDINKMKGYTLLSEGIDEMV	K	R	D	N	K	M	0	2	1	3	0	0	1	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	10	2	1296.6171	sp|O75643|U520_HUMAN	sp|O75643|U520_HUMAN	74	83	yes	yes	3	0.015883	28.204		1	1913100	0	1913100			811	80	813	1078	1097	1097			1	0	1913100
SGDSEVYQLGDVSQK	NPVTIFSLATNEMWRSGDSEVYQLGDVSQK	SGDSEVYQLGDVSQKTTWHRISVFRPGLRD	R	S	G	Q	K	T	0	0	0	2	0	2	1	2	0	0	1	1	0	0	0	3	0	0	1	2	0	0	15	0	1610.7424	sp|Q04837|SSBP_HUMAN	sp|Q04837|SSBP_HUMAN	67	81	yes	yes	3	0.0011788	47.037	1		2146300	2146300	0			848	433	850	1127	1150	1150			1	3608800	0
SVPTSTVFYPSDGVATEK	DGPSQMALEDLAMFRSVPTSTVFYPSDGVA	TSTVFYPSDGVATEKAVELAANTKGICFIR	R	S	V	E	K	A	1	0	0	1	0	0	1	1	0	0	0	1	0	1	2	3	3	0	1	3	0	0	18	0	1883.9153	sp|P29401|TKT_HUMAN	sp|P29401|TKT_HUMAN	439	456	yes	yes	3	0.032005	24.043	1	1	4592500	1282700	3309900			894	236	896	1187;1188	1211;1212	1211			2	2156700	3309900
TIFQGIAAK	SLMPGGNKEAWPHIKTIFQGIAAKVGTGEP	AWPHIKTIFQGIAAKVGTGEPCCDWVGDEG	K	T	I	A	K	V	2	0	0	0	0	1	0	1	0	2	0	1	0	1	0	0	1	0	0	0	0	0	9	0	947.54402	sp|P52209|6PGD_HUMAN	sp|P52209|6PGD_HUMAN	155	163	yes	yes	2	0.034267	35.88	1		8805200	8805200	0			928	334	930	1231	1258	1258			1	14805000	0
TPGPGAQSALR	ALHIKLRATGGNRTKTPGPGAQSALRALAR	NRTKTPGPGAQSALRALARSGMKIGRIEDV	K	T	P	L	R	A	2	1	0	0	0	1	0	2	0	0	1	0	0	0	2	1	1	0	0	0	0	0	11	0	1053.5567	sp|P62263|RS14_HUMAN	sp|P62263|RS14_HUMAN	107	117	yes	yes	2	1.0715E-05	98.044	1	1	32266000	11670000	20596000			946	386	948	1258;1259	1285;1286	1286			2	19621000	20596000
TVFAEHISDECK	IVGYVETPRGLRTFKTVFAEHISDECKRRF	TFKTVFAEHISDECKRRFYKNWHKSKKKAF	K	T	V	C	K	R	1	0	0	1	1	0	2	0	1	1	0	1	0	1	0	1	1	0	0	1	0	0	12	0	1434.6449	sp|P39023|RL3_HUMAN	sp|P39023|RL3_HUMAN	104	115	yes	yes	3	1.0896E-09	110.31	1	1	32840000	12927000	19913000			970	284	972	1293;1294	1320;1321	1320			2	21736000	19913000
TYEVSLR	TICFVYQDPQGRHVKTYEVSLREKEFNKGP	DPQGRHVKTYEVSLREKEFNKGPWKQENVE	K	T	Y	L	R	E	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	1	1	0	1	1	0	0	7	0	866.44978	sp|Q16531|DDB1_HUMAN	sp|Q16531|DDB1_HUMAN	192	198	yes	yes	2	0.010445	70.912	1	1	4487800	1438800	3049000			979	501	981	1305;1306	1334;1335	1335			2	2419200	3049000
VIQEIVDK	VPRNLVGKVIGKNGKVIQEIVDKSGVVRVR	VIGKNGKVIQEIVDKSGVVRVRIEGDNENK	K	V	I	D	K	S	0	0	0	1	0	1	1	0	0	2	0	1	0	0	0	0	0	0	0	2	0	0	8	0	942.5386	sp|P51114|FXR1_HUMAN;sp|P51116|FXR2_HUMAN	sp|P51114|FXR1_HUMAN	303	310	yes	no	2	0.016622	60.682	1	1	6799200	2280900	4518400			1031	330	1033	1380;1381	1409;1410	1409			2	3835100	4518400
