# Bioreactor Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg

# Virtual Environment
venv/
ENV/

# IDE
.idea/
.vscode/
*.swp
*.swo

# Simulation outputs
simulation_outputs/
simulation_results/

# Analysis results
analysis_results/

# Visualization
reports/visualization/

# Configuration
config.local.yml

# Bioreactor specific
*.log
*.dat
*.csv
*.xlsx
*.xls
*.h5
*.hdf5
*.npy
*.npz

# Control system
control/.cache/
control/__pycache__/

# Modeling
modeling/data/cache/
modeling/data/raw/

# Simulation
simulation/data/cache/
simulation/data/raw/

# Visualization
dashboard/build/
dashboard/dist/
visualization/.cache/
visualization/__pycache__/

# Test outputs
tests/__pycache__/
tests/.cache/

# Coverage reports
coverage.xml
htmlcov/